Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01479 ATGAAGGTGGAAGAAAGAGAAGATGGGTCGGAATGTTCCAAGACAAGTCCTAATTGTAATGAAGAAGAAGATGGTAATTGTAGTGAAGAGGAGGAGGCCAATAATGAATTATTAGAAGATGAAAGGTGTAAGCAAAACAATGGAGGGAGTTCAAGCAATAGCACTGTGGAAGAGAATCATGAGAAGAAGACATCAGTTAGGCCTTATGTTAGATCCAAGTTGCCAAGGCTTCGTTGGACTCCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCTACCCCAAAGTTGGTTCTTCAGTTGATGAATATAAAAGGCTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGATAGTTGACACAAATCAAGTATTGGCTGATCATAGGCTTCTTATAGAAAGTGGAGACAGAAATGTTTATAATCTCAGCCAACTTCCCATGCTTCAAGGCTATAATCCAACCCAAACTTCAGCATATAGATTTGGATATGGGGATGCTTCTCTTGCTATGTATGAAAACATGGTGCATAGGCCTTTCATGGGTAGGAGTTCAATAGATGAATCTGGAGCTGAATTTTATGGCAGAATGACTGAAAGGAATATTCATGGGACTAATAGCAACATCAATTGGAGTAATAGTAGTATTTTCCAAGTGGATTCTTCCAATTTTAGTGAACTATCAAAAAGCAAAGTCCATGAATCAACAAAAGATAAATTCCTCTCCTTTGGTGGCCATGAATCTCTATGCACACAAATCAAATTGAGTACTCAAATTAATGTTCTTCATCCATCAACACAAGTAGTGGAGCCAAATGCACAAGAGCTCATGACAAATCAAGAGGAAATGAAAAAAAGGAAGGCTTCAGATATTGACCTTGATTTGGATCTTTCACTTAAATTAAATTCAAGGATGAGTAATGCTGAGATTAACCAAGGAAGCATAGAGGACCATGAAGTTGATAGCAATCTATCACTCTCTTTGTATTCTCAATCTTCTAAAGAAGCACAACATGATCATTCTACTAAGGAGCAAAGGAAAAGAGCAAATGCTTTGGATCTGACTATATGA 1107 0.3776 MKVEEREDGSECSKTSPNCNEEEDGNCSEEEEANNELLEDERCKQNNGGSSSNSTVEENHEKKTSVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIVDTNQVLADHRLLIESGDRNVYNLSQLPMLQGYNPTQTSAYRFGYGDASLAMYENMVHRPFMGRSSIDESGAEFYGRMTERNIHGTNSNINWSNSSIFQVDSSNFSELSKSKVHESTKDKFLSFGGHESLCTQIKLSTQINVLHPSTQVVEPNAQELMTNQEEMKKRKASDIDLDLDLSLKLNSRMSNAEINQGSIEDHEVDSNLSLSLYSQSSKEAQHDHSTKEQRKRANALDLTI. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01479 368 MobiDBLite consensus disorder prediction 1 69 - -
Seca2g01479 368 Pfam Myb-like DNA-binding domain 77 127 IPR001005 -
Seca2g01479 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 130 IPR006447 GO:0003677
Seca2g01479 368 Gene3D - 74 131 - -
Seca2g01479 368 FunFam Myb family transcription factor 73 131 - -
Seca2g01479 368 SUPERFAMILY Homeodomain-like 74 129 IPR009057 -
Seca2g01479 368 MobiDBLite consensus disorder prediction 348 362 - -
Seca2g01479 368 MobiDBLite consensus disorder prediction 342 368 - -
Seca2g01479 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 131 IPR017930 -
Seca2g01479 368 Coils Coil 20 40 - -
Seca2g01479 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 54 275 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01479 Seca-Chr2 25991309 25993688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01479 66 159 G2-like Transcription Factor Family AT2G42660 55.963 1.89e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca2g01479 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01479 - - gmx:102662997 426.017