Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01475 ATGGCTTCACAAACTCTTATCTTCCTCCTCTTACTCCCTCTCCTACACCTAGTTGCTGCCAAGTCTTTTGTCTTTGAAGGATTCAATAACAAAAGTGAACTCACCCTTTATGGTGCTTCCATTATCAAAACCAGTGCTTTACTTAAGCTCACAAACAGATCAACCAATATTATAGGCCATGCATTCTATTCCATACCTTTCCAAATGCTTAATAAAACAAATTCTTCAGCCCCACAAAATGCTTATTCCTTTAGTACCTCCTTTGTTTTCTCAATTGTATCACCAAGTTCTGGCTCTGGTGGCTTTGGCCTTGCCTTCACCATAGCACCTTCAACACAATTTCCTGGAGCTGAGGCAGGGCATTATCTTGGTCTTCTTAACACCAACAATGATGGGGATTCCTCAAATCACATATTTGCAGTTGAATTTGATACTGTGAATGGTCACAAAGGTGATTCTGACTCTGAAGGAAACCATGTTGGAGTCAACATAAACAGCATGTCCTCAAGAATTACTGAACCAGCTGCATATATTCAAGAAGGTACAGATAGTGTGAAGGAAGATTTCAGAATGGCAAAGGTTGATGCTGTCCAAGCTTGGATAGAATATGATGGTAAAAAGAAAACTGTGAATGTAACAGTAGCCCCTTTGCCATTACAAAGACCAAGAAAACCACTTATACTTAATTATCCCATTGATCTTAACACTGTTATGAAGGAAAACATGTATGTTGGTTTCTCAGCTTCAACAGGTAGCAAGGAAACAAGCTCCCATTATATCTTGGGATGGAGTTTTGCAGTAAATGGAGCTGCCCCTTCTCTGAATATTTCTAAGCTTCCAAGTCCACCACCAAAGGAGCAAGAACCATCTTCCTTTCCTTGGTTCAAGGTTGCAATTGGCATTTTAGCTGCTTTGATCTTCACCTTGTCAATTTATAAGAGATACATGGATTTTGAGGCTCTTGAGGACTGGGAGATGGATTGTCCTCACAGATTTAGATACAAAGATCTTCACATAGCAACAAAAGGGTTCAAAGAGAGCCAACTAATTGGAGTTGGAGGCTTTGGTGCTGTATATAAAGGTGTGTTACCAACTACAGGAACTGAGGTTGCTGTTAAAAGAATTGTTCGCAGCCCTTTCCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGGTTAAGGCACAAGAATTTGGTGAATCTTCAAGGGTGGTGTAAGAAAAAGAATGATCTACTCCTAGTCTATGATTTCATTCCAAATGGAAGCCTTGATTCTATTCTATTTAACCATAATGCAAATTTTGTTTTGGATTGGGACCAAAGATTCAGAATCCTAAAAGGCATCACTGCAGGATTATTGTATCTGCATGAAGAGTGGGAACAAGTTGTGATCCATAGAGATGTGAAAACTAGCAATATTCTAATAGATGGGGACTTGAATGCTCGTTTAGGTGACTTTGGACTAGCAAGGCTTTATGATCATGGTCAAGTATCACACACAACTAGTGTGGTTGGCACAATTGGGTATATTGCACCAGAGTTAACTCGCACAGGAAAGGCATCAACAAGATCAGATGTGTATGCATATGGGGTTCTACTCCTTGAAATGGTTACAGGGAAGAGACCTATTGGTATTGGATCATCAGATCAGTTTTTCTTGGTGGAATGGGTTATTGAAAGTTACCAATTGGGTCAAATTCTTGAGGTAATTGATCCTAAGCTGAATTCAGTTTATGATGAGGAAGAAGTGGAGTTGGTTCTGAAGTTGGGTCTCCTCTGCACTCAACAAAGAGCAGATTATAGACCAACCATGAAACAAGTTACAAGGTACCTAAACTTTGATGACCCTCTTCCTGATATTGCTGATTGGAGAAGGAGTGTTTCTGAGAGCAGCACATTGAGCTCAGGTTTCTTAGCAGCAACTTCTATGAGTACTATTGCAACATCAAACAATTTATCTTCCATAGGCATGAGTACAGTGTCCATAGATGCTGGTAGATAG 2010 0.399 MASQTLIFLLLLPLLHLVAAKSFVFEGFNNKSELTLYGASIIKTSALLKLTNRSTNIIGHAFYSIPFQMLNKTNSSAPQNAYSFSTSFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEAGHYLGLLNTNNDGDSSNHIFAVEFDTVNGHKGDSDSEGNHVGVNINSMSSRITEPAAYIQEGTDSVKEDFRMAKVDAVQAWIEYDGKKKTVNVTVAPLPLQRPRKPLILNYPIDLNTVMKENMYVGFSASTGSKETSSHYILGWSFAVNGAAPSLNISKLPSPPPKEQEPSSFPWFKVAIGILAALIFTLSIYKRYMDFEALEDWEMDCPHRFRYKDLHIATKGFKESQLIGVGGFGAVYKGVLPTTGTEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDFIPNGSLDSILFNHNANFVLDWDQRFRILKGITAGLLYLHEEWEQVVIHRDVKTSNILIDGDLNARLGDFGLARLYDHGQVSHTTSVVGTIGYIAPELTRTGKASTRSDVYAYGVLLLEMVTGKRPIGIGSSDQFFLVEWVIESYQLGQILEVIDPKLNSVYDEEEVELVLKLGLLCTQQRADYRPTMKQVTRYLNFDDPLPDIADWRRSVSESSTLSSGFLAATSMSTIATSNNLSSIGMSTVSIDAGR. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01475 669 FunFam L-type lectin-domain containing receptor kinase S.4 421 626 - -
Seca2g01475 669 Gene3D Transferase(Phosphotransferase) domain 1 421 627 - -
Seca2g01475 669 ProSiteProfiles Protein kinase domain profile. 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01475 669 Pfam Legume lectin domain 21 280 IPR001220 GO:0030246
Seca2g01475 669 FunFam L-type lectin-domain containing receptor kinase V.9 19 273 - -
Seca2g01475 669 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
Seca2g01475 669 SMART serkin_6 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01475 669 Pfam Protein kinase domain 344 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01475 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 284 IPR013320 -
Seca2g01475 669 SUPERFAMILY Protein kinase-like (PK-like) 327 622 IPR011009 -
Seca2g01475 669 CDD lectin_legume_LecRK_Arcelin_ConA 22 269 IPR001220 GO:0030246
Seca2g01475 669 Gene3D - 19 277 - -
Seca2g01475 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Seca2g01475 669 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Seca2g01475 669 PANTHER - 39 616 - -
Seca2g01475 669 CDD STKc_IRAK 350 615 - -
Seca2g01475 669 FunFam Lectin-domain containing receptor kinase VI.3 329 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01475 Seca-Chr2 25874403 25876433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01475 23 625 Receptor kinase-like Gene Family AT3G08870 51.691 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca2g01475 Pkinase 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01475 - - gmx:100802724 1010.75