Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01473 ATGGACTCAATTTTTCATCAAGTTGTTGAGCCTTATAACTTCACCATGGTTGACCATGTTGGTGACTGTGGGCCCTATGGCATCATCATAGATAACCATGTTGGTGATTATGGATTCAGTACTCTGTTGAGCACTCCAGAGGATACTCCTTCTCAAGCCTGCTCCACCTCCTTTCCTGCCATCATAAACCCCAATGATCATATCCAATACCCAATTGATGAAGAAATCCTTCAACTCCCATCTCTGATGGAATTTGATGGTTTTGATTCCATCCTGAGTGCCCATATGGTTGGTATTCATGGCCATGGAGACCCACAAGAAAGTGAAGGAAGCTTCCCTTCACAGAATTTACCCAGTGAGGTAGGAGATGCATGGAGTCCTACTCTATCAGAGAAGTCAGAGTTATCCTCAATTCAACCATCACTGACTTTGCCACAAGAAAACATGGAAATTGACAACCAAGTGAGCCTTCCACACCTAATAGAGGCTTTTGCAGAAGCCTTGGAGCAAGGACAGAAAGCACTAGAAAGAGTGATCTTGAGGTGCATAAATCAGAAAGTTAGCCTACTTGGTGAATCTCTTGAGCGCTTTGCATTCTACTTGTCTCAAGAAATGACAAATCATGGAGATTATCTCAAAGGGGAGGCCTTCAAGAACTTTTGGGATGCTTTGAGGGCATTCTATCAAGGGCTCCCACATGGAAAAGTTGCTCACTTTGCAGCTATTTCAGCAATTTTTGAAGCTATACCAGAAGATTGTGATACCATACACATAGTAGACTTTTGTATGGTATATGGGGTTCAGTGGGTTCCACTATTGGAGGCCATTGCACACCTTCACAAAACAGTGAAGTTGACATCAATCAAATGGGATGATGAATGCCCTGAATTTGTTTCCAACCCTTGCAATTTTGAGGAAACCAAAAGGCAACTCTATGAGCAAGCCAAATCCTGTGGTTTGAAATTGGAGATTGAGGAAAAGGGATTGGAAGAAGTGGTTACTGAGATTAAAGAAATGAACAAAAGGGGTGGGAGGAAAGAGTTTTTGGCCTTCAATTGTATGGTAGGTCTTCCACATATGGGGAGGGTAAGGAGCAGAAGATTTCATGCCAAGGAGTTTCTAAAGGTGGCTGAGGATTTGATCAAAAGCTCTGGCAACAAGGGAATTATCACTTTTGGGGATGGTGATGCATTTGAGAAATTGAAAAATAGCTTGAATTTCAGGTCATTTTTTGAAGGGCACTTGGTGCACTACCTGGCCTTGTTAGAATCGATTGAATCACATTTCACAACTCATTTCTCAGAAGCAAGAACTGTCTGTGAGTGCCTATTTGTGGCTCCTTATATCTCTTCTCTGGATTGGTTACAAACATGGGAGGAAATGAAAAGGGATTGCCATCTTGAGGCAGAGATTAGCATAAAGGGTTGCAGTTTGAGCAAAAATATATTAATGGAAGTCAGTGAAGTGTTAAGAGGGTGTGAAGGTTCATATCAGGCCAGGATTGAAGGACAGTATGGCAATGAACTTGTTTTGGAATTTAAAGGAACCCAACTATTAAGAGTTTCAATTTGGAAAAACTAA 1581 0.4156 MDSIFHQVVEPYNFTMVDHVGDCGPYGIIIDNHVGDYGFSTLLSTPEDTPSQACSTSFPAIINPNDHIQYPIDEEILQLPSLMEFDGFDSILSAHMVGIHGHGDPQESEGSFPSQNLPSEVGDAWSPTLSEKSELSSIQPSLTLPQENMEIDNQVSLPHLIEAFAEALEQGQKALERVILRCINQKVSLLGESLERFAFYLSQEMTNHGDYLKGEAFKNFWDALRAFYQGLPHGKVAHFAAISAIFEAIPEDCDTIHIVDFCMVYGVQWVPLLEAIAHLHKTVKLTSIKWDDECPEFVSNPCNFEETKRQLYEQAKSCGLKLEIEEKGLEEVVTEIKEMNKRGGRKEFLAFNCMVGLPHMGRVRSRRFHAKEFLKVAEDLIKSSGNKGIITFGDGDAFEKLKNSLNFRSFFEGHLVHYLALLESIESHFTTHFSEARTVCECLFVAPYISSLDWLQTWEEMKRDCHLEAEISIKGCSLSKNILMEVSEVLRGCEGSYQARIEGQYGNELVLEFKGTQLLRVSIWKN. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01473 526 MobiDBLite consensus disorder prediction 102 126 - -
Seca2g01473 526 Coils Coil 322 342 - -
Seca2g01473 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 141 490 IPR005202 -
Seca2g01473 526 MobiDBLite consensus disorder prediction 108 123 - -
Seca2g01473 526 ProSiteProfiles GRAS family profile. 148 525 IPR005202 -
Seca2g01473 526 Pfam GRAS domain family 159 525 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01473 Seca-Chr2 25748467 25750047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01473 140 452 GRAS Transcription Factor Family AT5G66770 26.524 3.14e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca2g01473 GRAS 1.6e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01473 - - gmx:100784347 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01473 2 25748467 25750047 Seca2g01473 2 25748467 25750047 ECH