Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01469 ATGCTTGACAAGCTTGGTGGTGCCTTTGCGCCAAAGCCATCATCTGGACCCCATAAATCAAGGGAGTGCCTGCCTTTGATCCTTATTCTGCGAAACAGACTAAAATATGCTCTCACATATAGAGAAGTAATTTCCATCTTAATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACTGACAAGACGTACCCTGCTGGTTTTATGGATGTCGTATCTATTCCTAAGACAAATGAAAATTTCCGTCTTCTTTATGACACAAAGGGTCGGTTCCGTCTCCACTCTGTCAGGGATGATGAGGCAAAGGTCTGTCTTGTTTTTCATAATCCCTGTAATCTTAACTTGCAATATAATATTACTGTTTTTTTGTAA 372 0.4113 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKVCLVFHNPCNLNLQYNITVFL. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01469 123 Gene3D - 1 99 IPR036986 GO:0003723
Seca2g01469 123 CDD S4 33 94 - -
Seca2g01469 123 ProSiteProfiles S4 RNA-binding domain profile. 24 86 - -
Seca2g01469 123 FunFam 40S ribosomal protein S4 1 99 - -
Seca2g01469 123 Pfam S4 domain 29 72 IPR002942 GO:0003723
Seca2g01469 123 Pfam RS4NT (NUC023) domain 1 21 IPR013843 -
Seca2g01469 123 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 104 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca2g01469 123 SMART s4_6 24 88 IPR002942 GO:0003723
Seca2g01469 123 Pfam Ribosomal family S4e 77 105 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01469 Seca-Chr2 25709716 25711461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01469 1 105 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 91.429 8.16e-69 205