LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g01441	ATGGTTGACAGCCTCACCTGTCTGTTAACCATATCACGTGTAGTTTGGTCCTTAGTCTTGTTTCTTCTCCTCACTACAAATTTGTTGTGGTTTCATCCCAAAAGAACTGCTTTGGCCTTAGGAAACAAAACTAATTACTCTGCACTACTAAAATTCAAAGAATCAATATCTGAAGACCCTTTTGGAGCGTTGGCCTCTTGGAATAGCTCTAGCCACTTTTGCAACTGGCATGGAGTCACATGCAGCCACCAGCATCATCAAAGAGTTACAAAGTTGAACCTAATAGGATATCACTTGTATGGATTCATATCACCCCACATTGGGAGCCTCTCCTTTCTAAGAATCCTCCAACTTAAGGACAATAGCTTCCATGGTGAAGTCCCAAAAGAATTGGGTCGTTTATTCCGACTACAGGAGCTGTATTTCTCCAATAACACATTATTAGGAGGAGAATTTCCCATCAGCTTGAAAAATTTCTCTAAACTAAGAGTGTTGAGTTTATGTGGGAATCAATTCATTGGTGAAATACCAATGGAGATTGGTTCCTTTAGCAAGCTTGAGTGGTTGGATTTTTATGATAACAATTTAACTGGACAAATCCCAAGTTCTATAGGAAATCTATCTTCCTTTTACAATTTGTCATCTCTCACTACCATCTCAATAGCAGCTAATCGATTCCAAGGTTCTCTTCCACCCAACATGTTTCTCACCCTCCCTAATCTTAGGCAATTACTTATTGGTGGGAATCAATTCTCAGGTCCAATCCCAAATTCCATCACTAATGCATCTGGGATACAAAAACTAGGTATTAACCACAACCATTTTGTAGGACAAGTCCCAAGTCCAGAGAATCTACTAGATATTTCAGTGCTAAACCTAGCATTTAATTATCTTGGTAGTAATTCATCTAATGACTTGCAGTTTCTAAAGTCTTTGACAAATTGTAGTCAGCTACATATATTGGACATAGCCTCTAATAAGTTTGGAGGGTCTCTACCTTATTTTATGGGCAATTTTTCCACCAAACTCACCAGACTAGTTCTTGGTGGCAATCAAATATTTGGAAAAATCCCAATGGAATTAGGAAATCTTGTTGACTTAATTTCCATTGGTATGGAAAACAATAACCTAATCGGGATGATTCCATCTACTTTAGGTAACCTTCAAAATTTGCAAGTATTATCTTTGGGAGGAAATCGATTGTCTGGAGAGATACCATCATTCATAGGGAATCTCACTCAGTTGTTTGAATTGGAATTATCAATTAACAAGTTTGTTGGGAATATTCCTCAAACAATTGGAAATTGTACTCATTTAGGATTTCTACACCTTGCAGATAATAGCCTTAGTGGAGAGGTGGGCATGCTAAAAAGTATTAATGAGTTGCATTTGTCTGAAAACTATTTCTCCGGTCGCATTCCCGAAACCATTGAAGAATGCATAGCCTTGGAGAAGCTTACTATGAAGGGGAATTCCTTCAACGGAAGCATACCAGATTCATTGGCTTCACTGAAAGGTGAGGTGCCAACAAATGGTGTTTTTCACAATGCAAGTGCAATTTCAGTGATAGGAAATGACAAGCTTTGTGGTGGGATATCTGAACTAAAGCTTCAACCTTGCCCCTTGAATGCCACAAAAAGGAGAAACCATCATAATCTTAAACTAATAGTATTGGTGATATTATGTTTGGTTGTATTTCTTCTTATACTATCTTGTATCCTTGCTATATATCTGATAAGGAAAAGGCACAAAAAGGCATCTACAAATTCTACAATTGATCAATTTCCTAAGGTGTCATATCAAAACCTACACCAAGCAACTGATGGGTTCTCAACTGAAAACTTGATAGGGATGAGGAGTCATGGATCTGTTTACAAAGGATTTTTTGAATCAGAAGAAAGAGTTGTCACTATAAAGGTTCTAAACCTTCAAAAGAAAGGTGTTCAAAAAAGTTTTATTTCCGAATGCAATGCACTTAAAAATATTCGACATAGAAATCTAGTGAAGATTGTCACATGTTGCTCTAGTATGGATTACAATATAAAAGATTTTAAAGCTCTAGTTTTTGAGTACATGTTAAATAAAATCATAGAGGAATGGTTGCATCCAAAGAATAGAAATGCAGAACAACAGAGAATATTGACCCTGGAGAAAAGATTAGATATTATTATTGGTGTTTCTTCTGCAATACACTATCTTCACCATGAATGTCAAGAGTCAATTATTTATTGTGACTTAAAGCCAAGCAATGTTCTTCTTGATGAGGACATGGTTGCTCATGTGAGTGATTTCGGCTTAGCAAGAATTCTCTCAGCAATTGACAGTAACGTTCACAATCAAAATAGTACAAGTGGAATAAAGGGGACTATAGGTTATGCTCCCCCAGAGTATGGAGCAAGTTCTCAGGTTTCAACAAAAGGTGACATGTATTGCTTTGGTATTCTTATTTTGGAGATGTTGACTGGGAAACGACCAACAGAGGAAATGTTTAAAGATGCATACAACCTCCATAACTATGTTAAAAATGCATTTCCAAATAACATATTGCTGATCATTGATGCAACTCTTCTCTCAATGGAAACAGAAGAAAACAACCTGTCTGAGATTGCAAATAATATGCATCCTAATGCTGAAAAGTGCTTGTTTTCACTATTTAAGATTGGTCTTGCTTGTTCAGTGGACTCACCAAGAGAAAGAATGGATATGATGGAAGTCATCAGGGAGCTAAATATAATAAGAAATGCTTTCTATGCTTGA	2757	0.3671	MVDSLTCLLTISRVVWSLVLFLLLTTNLLWFHPKRTALALGNKTNYSALLKFKESISEDPFGALASWNSSSHFCNWHGVTCSHQHHQRVTKLNLIGYHLYGFISPHIGSLSFLRILQLKDNSFHGEVPKELGRLFRLQELYFSNNTLLGGEFPISLKNFSKLRVLSLCGNQFIGEIPMEIGSFSKLEWLDFYDNNLTGQIPSSIGNLSSFYNLSSLTTISIAANRFQGSLPPNMFLTLPNLRQLLIGGNQFSGPIPNSITNASGIQKLGINHNHFVGQVPSPENLLDISVLNLAFNYLGSNSSNDLQFLKSLTNCSQLHILDIASNKFGGSLPYFMGNFSTKLTRLVLGGNQIFGKIPMELGNLVDLISIGMENNNLIGMIPSTLGNLQNLQVLSLGGNRLSGEIPSFIGNLTQLFELELSINKFVGNIPQTIGNCTHLGFLHLADNSLSGEVGMLKSINELHLSENYFSGRIPETIEECIALEKLTMKGNSFNGSIPDSLASLKGEVPTNGVFHNASAISVIGNDKLCGGISELKLQPCPLNATKRRNHHNLKLIVLVILCLVVFLLILSCILAIYLIRKRHKKASTNSTIDQFPKVSYQNLHQATDGFSTENLIGMRSHGSVYKGFFESEERVVTIKVLNLQKKGVQKSFISECNALKNIRHRNLVKIVTCCSSMDYNIKDFKALVFEYMLNKIIEEWLHPKNRNAEQQRILTLEKRLDIIIGVSSAIHYLHHECQESIIYCDLKPSNVLLDEDMVAHVSDFGLARILSAIDSNVHNQNSTSGIKGTIGYAPPEYGASSQVSTKGDMYCFGILILEMLTGKRPTEEMFKDAYNLHNYVKNAFPNNILLIIDATLLSMETEENNLSEIANNMHPNAEKCLFSLFKIGLACSVDSPRERMDMMEVIRELNIIRNAFYA.	919

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g01441	918	Gene3D	Ribonuclease Inhibitor	149	210	IPR032675	-
	Seca2g01441	918	Gene3D	Ribonuclease Inhibitor	44	148	IPR032675	-
	Seca2g01441	918	Gene3D	Ribonuclease Inhibitor	211	541	IPR032675	-
	Seca2g01441	918	SUPERFAMILY	L domain-like	304	530	-	-
	Seca2g01441	918	FunFam	Leucine-rich repeat receptor protein kinase EMS1	176	282	-	-
	Seca2g01441	918	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	581	691	-	-
	Seca2g01441	918	FunFam	LRR receptor-like serine/threonine-protein kinase GSO1	311	505	-	-
	Seca2g01441	918	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	692	918	-	-
	Seca2g01441	918	SUPERFAMILY	L domain-like	44	298	-	-
	Seca2g01441	918	Gene3D	Phosphorylase Kinase; domain 1	574	691	-	-
	Seca2g01441	918	FunFam	Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1	44	156	-	-
	Seca2g01441	918	Gene3D	Transferase(Phosphotransferase) domain 1	692	916	-	-
	Seca2g01441	918	PANTHER	OS04G0122200 PROTEIN	504	910	-	-
	Seca2g01441	918	SUPERFAMILY	Protein kinase-like (PK-like)	586	910	IPR011009	-
	Seca2g01441	918	Pfam	Leucine rich repeat N-terminal domain	46	82	IPR013210	-
	Seca2g01441	918	ProSiteProfiles	Protein kinase domain profile.	610	917	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g01441	918	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	741	753	IPR008271	GO:0004672\|GO:0006468
	Seca2g01441	918	Pfam	Protein kinase domain	612	841	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g01441	918	SMART	serkin_6	610	917	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g01441	Seca-Chr2	24281316	24284532	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g01441	42	917	Receptor kinase-like Gene Family	AT3G47570	40.282	0.0	707

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Seca2g01441		Pkinase	5.5e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g01441	-		-	gmx:100797146	902.508