Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01430 ATGCACGTTACTCTCTTCATTCTACTTTTCTTCTCCTTCTCCTTCTTCTTCTTCTTCCACCACGTTGTTTCTCTCTCCTCCGACGGCCTTGCCCTTCTCACTCTAAAATCCGCCGTCGACGGCGATGGCGCCGCAGCATTCTCCGACTGGAATGACGGTGACACCACCCCGTGCCGGTGGTCCGGCATCAGCTGCGCCAACATCTCCGGCGACCCTGACCCCCGCGTCGTCGGCGTTGGTCTCGCCGGCAAGGGTCTCCGCGGTTACCTACCATCGGAGCTCGGCAACCTCCGCTACCTCCGGCGCCTGAGCCTCCACACCAACGCTTTCCATGGCTCCATCCCTTCACAGCTCTTCAACGCCACCGCGCTTCACAGCGTTTTCCTCCACGGCAACAACCTCTCCGGTAACCTTCCTCCCTCCGTTTTCAATCTCCCTCGCCTCCAAAACCTCGACCTCTCCGACAACTCCCTCGCCGGCGCCATCCCTAACTCCCTCGGAAACTGCACGCAGCTCCAGCGTCTAATCCTCGCACGCAACAATTTCTCCGGCGAGATTCCGGCGACTCCTTGGCCGGAGTTGAAGAACCTCGTCCAGCTCGACCTCTCCGCGAACCTTCTAGAAGGTTCGATTCCTGACCAAATCGGCGACCTGAGCTCCCTCTCCGGAACCCTAAACCTATCCTTCAACCACCTCTCCGGTAGGGTTCCAAAGTCCCTCGGGAAATTGCCTGTGACGGTGAGCTTCGATCTTCGAAACAACGATCTCAGTGGCGAGATTCCTCAAACGGGGTCGTTTTCGAACCAGGGACCCACAGCGTTCCTCAACAACCCGAACCTATGCGGTTTCCCTTTGCAAAATCCGTGTAACGGTTCGGCACCGAGTGAACCGGGATCGAGTCCCGGTTTGGCTCGTGAACCGGGGAGCCGGCCCAAGAAAGGGTTAAGCCCCGGTTTGATTATTTTAATCTCAGTTGCTGATGCTGCTGGTGTGGCTTTGATTGGGCTTGTGGTTGTGTATGTTTATTGGAAGAAGAAGGACAAGTCCAATGGGTGTAGTTGCACTGGGAAGAGCAAGTTTGGTGGTAGTGAGAACAATGAGAAAGCAAGTTTGTGTTGTTTTTGTGGGTCTTTGAAGTGTGTTAATGGGTTTAGAAGTGATGATTCTGAGATGGAGGATGGTGAGAAAGGAGGAGAGAGTGGGAGAGGGGAAGGGGAAGGGGATTTGGTGGCCATTGATAAAGGTTTCAATTTTGAGCTTGATGAGCTATTGAGGGCCTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGCTTGGGAATGGGGTTCCTGTGGCTGTGAGGAGATTGGGGGAGGGTGGGGAACAGAGGTACAAGGAGTTTGCTGCTGAAGTTCAAGCCATTGGGAAAGTGAAGCACCCTAATATTGTGAAGTTGAGAGCTTATTATTGGGCTCCTGATGAGAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGCCAACCATCACCGAATCTTTCATGGTCAACCAGGCTGAGAATAGCCAAAGGAACAGCTAGGGGTTTGGCTTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCATGGTGATATAAAACCCTCCAATATCCTCCTTGATGCAGAATTCCAACCCCACATTTCTGATTTTGGTCTTAACCGGCTAATTAGCATCACTGGCAACAACCCCTCTTCTGGTGGCTTTATGGGTGGAGCTCTTCCTTACTTGAAGTCATCACAAACAGAGCGAACTAACAACTATAAAGCCCCTGAGGCTCGAGTCCCTGGCTGCAGACCTACCCAGAAATGGGATGTGTACTCATTTGGAGTTATATTACTTGAATTGCTCACTGGGAAGTCCCCTGATTCTTCTCCAGCAGCATCAACTTCTATGGAAGTCCCTGACTTGGTGAGGTGGGTAAGGAAAGGGTTTGAACAAGAAAACCCATTATCTGAAATGGTTGATCCATCCCTTCTCCAAGAAGTTCATGCCAAGAAAGAGGTACTAGCTGTGTTTCATGTGGCACTATCGTGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAAGTGTCTCTGAAAATCTTGAAAGAATTTGA 2163 0.5136 MHVTLFILLFFSFSFFFFFHHVVSLSSDGLALLTLKSAVDGDGAAAFSDWNDGDTTPCRWSGISCANISGDPDPRVVGVGLAGKGLRGYLPSELGNLRYLRRLSLHTNAFHGSIPSQLFNATALHSVFLHGNNLSGNLPPSVFNLPRLQNLDLSDNSLAGAIPNSLGNCTQLQRLILARNNFSGEIPATPWPELKNLVQLDLSANLLEGSIPDQIGDLSSLSGTLNLSFNHLSGRVPKSLGKLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQNPCNGSAPSEPGSSPGLAREPGSRPKKGLSPGLIILISVADAAGVALIGLVVVYVYWKKKDKSNGCSCTGKSKFGGSENNEKASLCCFCGSLKCVNGFRSDDSEMEDGEKGGESGRGEGEGDLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDAEFQPHISDFGLNRLISITGNNPSSGGFMGGALPYLKSSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVILLELLTGKSPDSSPAASTSMEVPDLVRWVRKGFEQENPLSEMVDPSLLQEVHAKKEVLAVFHVALSCTEGDPEVRPRMKSVSENLERI. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01430 720 SUPERFAMILY Protein kinase-like (PK-like) 430 717 IPR011009 -
Seca2g01430 720 FunFam Leucine-rich repeat receptor-like protein kinase 196 291 - -
Seca2g01430 720 SMART LRR_typ_2 194 218 IPR003591 -
Seca2g01430 720 SMART LRR_typ_2 145 169 IPR003591 -
Seca2g01430 720 SMART LRR_typ_2 97 121 IPR003591 -
Seca2g01430 720 MobiDBLite consensus disorder prediction 291 311 - -
Seca2g01430 720 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 192 - -
Seca2g01430 720 SUPERFAMILY L domain-like 27 286 - -
Seca2g01430 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 501 720 - -
Seca2g01430 720 Gene3D Ribonuclease Inhibitor 191 291 IPR032675 -
Seca2g01430 720 PRINTS Leucine-rich repeat signature 148 161 - -
Seca2g01430 720 PRINTS Leucine-rich repeat signature 194 207 - -
Seca2g01430 720 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 194 720 IPR046959 -
Seca2g01430 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Seca2g01430 720 Gene3D Phosphorylase Kinase; domain 1 413 500 - -
Seca2g01430 720 ProSiteProfiles Protein kinase domain profile. 425 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01430 720 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Seca2g01430 720 Gene3D Transferase(Phosphotransferase) domain 1 501 720 - -
Seca2g01430 720 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Seca2g01430 720 Pfam Protein kinase domain 430 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01430 720 SMART serkin_6 429 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01430 720 FunFam Leucine-rich repeat receptor-like protein kinase 408 500 - -
Seca2g01430 720 Gene3D Ribonuclease Inhibitor 25 190 IPR032675 -
Seca2g01430 720 CDD STKc_IRAK 431 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01430 Seca-Chr2 24079288 24084200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01430 23 720 Receptor kinase-like Gene Family AT1G67510 70.687 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca2g01430 Pkinase 1.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01430 - - gmx:100795021 1186.79