Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01427 ATGAAGCCTGATAGTACCGTTTCTGGAGATAGGAAATCACGCAAGAGACGCAGTGGTGGAAGAGGTGACTCAGTGGAAGATACTCTTGAGAAGTGGAAGAAGTATAACAGGCAGCAGCAACAACAACTTGGTTCTGGAGAAAATGGGGTTCACAAAGTTCCTGCAAAGGGCTCAAGAAAAGGGTGTATGAGAGGTAAAGGTGGGCCTCAGAATTCTGATTGCAAGTTCAGGGGTGTGAGACAGAGGATTTGGGGTAAGTGGGTTGCTGAGATTCGTGAACCTATCAATGGTAAGCATGTAGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCTACTGCACATGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGTCCTTGTGCCCGTTTGAACTTTCCTGAGTCTGCTGTGGACTCAATGGGCTCTAATGGATCAACATCTAGTGGATGTGATCAAAAATCACCAAATGGTTGTTCTGATGACACATTGAATGGTGGTAATCTTGTAAAAGATGAGGAGATGGAGGGGAATCTTCTCCAATCTCATGATGAAAAACTCAAATTTTCTGAGGTTGGTGTCTTTGAGGAAACTGAAGAAAAAAAGGTTCTTTCTGAAGATTGTGTGGCTGATGAGTCAGTAGAGGAGTTGAAGGAAGTGAAAATTGGTGTTGCTCAATGTCAAACAAATGAGAAGTGTAAGAATATAACTCATCAAGGGTCTTTCAGAAATGTTAAGCCTGAAACATCTGGAGAAAATGAAGGAATAGAGAGAGAATCAGAGGTGGTTTTGAAAAACTATGACATAGATGGAGAGTGTAATCATGTGCAGAAGGATATTGCCATGAATACAAGAGCTAATTGTGGCCCTTCTGATACTACTGAGCATGATATTCTAGTGGAAAGGGAAGAAACAAGAAGTGAATCTATGGAAACTTTGAAATCCTGTGAATTGAGCTGCAGCAACCTTTGCCTTGGATACCAGCAACATATGCTTCCATATAGCAATCCAATACCAAATTCTGAGCATTTTAACAACATCCAACCTGAGGCATCTATTGCAAAGAAACACAAGAAGGAAGTGATTTCAGAAATCCTGGAACTTTGTAGCAGCAGGTGCTCTAAGATTAGCCATGTTCAGTCACAAAATGAGCAATATAGAAATCAACATTTTGATGAGATGAAAACTGAGCTTAAAGGTTTGGAATGCAAGCTGAGAAATCATTCTATTGATTGCAAGAATGAAGAGGCACCAATTATAGGGGATTCCAATCATTCCATGCAGGGAACTCATCTGTTTGGTGGTGGCAATGTTGAACCAATTGAAAGAATGTCAGGGGTTGAGGCTTTGAACATCAACACTAATTGA 1383 0.41 MKPDSTVSGDRKSRKRRSGGRGDSVEDTLEKWKKYNRQQQQQLGSGENGVHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKHVGEKANRLWLGTFSTAHEAALAYDEAAKAMYGPCARLNFPESAVDSMGSNGSTSSGCDQKSPNGCSDDTLNGGNLVKDEEMEGNLLQSHDEKLKFSEVGVFEETEEKKVLSEDCVADESVEELKEVKIGVAQCQTNEKCKNITHQGSFRNVKPETSGENEGIERESEVVLKNYDIDGECNHVQKDIAMNTRANCGPSDTTEHDILVEREETRSESMETLKSCELSCSNLCLGYQQHMLPYSNPIPNSEHFNNIQPEASIAKKHKKEVISEILELCSSRCSKISHVQSQNEQYRNQHFDEMKTELKGLECKLRNHSIDCKNEEAPIIGDSNHSMQGTHLFGGGNVEPIERMSGVEALNINTN. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01427 460 MobiDBLite consensus disorder prediction 1 74 - -
Seca2g01427 460 MobiDBLite consensus disorder prediction 144 169 - -
Seca2g01427 460 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Seca2g01427 460 MobiDBLite consensus disorder prediction 1 34 - -
Seca2g01427 460 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Seca2g01427 460 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Seca2g01427 460 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Seca2g01427 460 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Seca2g01427 460 CDD AP2 74 141 IPR001471 GO:0003700|GO:0006355
Seca2g01427 460 Gene3D AP2/ERF domain 74 141 IPR036955 GO:0003700|GO:0006355
Seca2g01427 460 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 315 - -
Seca2g01427 460 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Seca2g01427 460 Coils Coil 396 416 - -
Seca2g01427 460 SUPERFAMILY DNA-binding domain 75 141 IPR016177 GO:0003677
Seca2g01427 460 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01427 Seca-Chr2 24062509 24064626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01427 14 140 AP2-EREBP Transcription Factor Family AT2G40340 59.231 4.18e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g01427 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01427 - - aprc:113861479 587.8