Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01399 ATGGACAACAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAGCAAGGATTTCATGGGGGCTCGTAAATTTGCTCTTAAAGCTCAGCAGTTGTATCCTGATCTGGAAAATATAGCTCAAATGCTTGTTGTTTGTGATGTGCATTGCTCTGCTGAGGTGAAATTGTTCGACAATGAGATGGACTGGTATGAAATTCTTCAACTGGAACAGACAGCTAGTGATGAAATGATTAAAAGGCAATACAGGATGTTCGCACTCCAACTTCATCCCGACAAAAACAAGTTTGTTGGTGCAGAAGCCGCATTTAAACTGATTGGGGAAGCTCAAAGAGTGCTTTTAGACAGAGAAAAACGATCTCAGTTTGACATGAAGTACAGGGTTCCAATGAACAAAACTGCTATGTCACATCGTAATCAGCAGAATGCTCCTATGAATTCCAGTTCTGCAATGAAAACCAATATCAGGCCCAATTTTGCAAACTCGAATACTCATCAGGGACAACAATATAAGCAGCCAGTTCAGCAGCAACAAAATGATGGTCGCCCTACTTTTTGGACTGTCTGCCCATTTTGTTCTGTTAAGTATCGATATTACAGAGAAATTTTAAGTAAACTTCTTCACTGTCAATATTGCAATACGCCTTTCATTGCATATAATATGGATTGGAAAAGTACATCATCAGCAACTAATTCAAGTCAGCAAGCTTTTGGCCAACAAAAAGATGGTCTGAATCATGGTCCTTCCAAGATGGGTGGATCTCAAGGCAACTTGCATGCTGAGAAGTCTAATACTGGGCTTCACGAGAAGAAAGGCCCTATTGATGTCTCTAGAAAGCTACATGGAAAGAGGAAGAGGAATAAGGTGGTAGAATCTAGTCAAAGTTCTGATTTTACGAGCAGCACTGATTCTGAAGGTGGTAGGGTTGTTGGTGAGGATGGTGTTCCTGGTGTAGAAAATCATTCAACTTATAGAGAAGAGCAACCACGCAGATCTGCACGAAAAAAGCATAAGGTTTCCTACAAGGATAATGTGAGTGACAATGATGATGACCTCTTAATGAAGTAA 1083 0.4044 MDNNKEEALRAKDIAEKKMESKDFMGARKFALKAQQLYPDLENIAQMLVVCDVHCSAEVKLFDNEMDWYEILQLEQTASDEMIKRQYRMFALQLHPDKNKFVGAEAAFKLIGEAQRVLLDREKRSQFDMKYRVPMNKTAMSHRNQQNAPMNSSSAMKTNIRPNFANSNTHQGQQYKQPVQQQQNDGRPTFWTVCPFCSVKYRYYREILSKLLHCQYCNTPFIAYNMDWKSTSSATNSSQQAFGQQKDGLNHGPSKMGGSQGNLHAEKSNTGLHEKKGPIDVSRKLHGKRKRNKVVESSQSSDFTSSTDSEGGRVVGEDGVPGVENHSTYREEQPRRSARKKHKVSYKDNVSDNDDDLLMK. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01399 360 SUPERFAMILY Chaperone J-domain 62 134 IPR036869 -
Seca2g01399 360 Pfam DnaJ domain 67 128 IPR001623 -
Seca2g01399 360 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 3 357 - -
Seca2g01399 360 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca2g01399 360 MobiDBLite consensus disorder prediction 233 360 - -
Seca2g01399 360 MobiDBLite consensus disorder prediction 233 247 - -
Seca2g01399 360 MobiDBLite consensus disorder prediction 344 360 - -
Seca2g01399 360 MobiDBLite consensus disorder prediction 297 311 - -
Seca2g01399 360 CDD DnaJ 67 120 IPR001623 -
Seca2g01399 360 SMART dnaj_3 66 123 IPR001623 -
Seca2g01399 360 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca2g01399 360 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca2g01399 360 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca2g01399 360 MobiDBLite consensus disorder prediction 142 185 - -
Seca2g01399 360 Gene3D DnaJ domain 64 186 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01399 Seca-Chr2 23498914 23499996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01399 4 226 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.456 2.61e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01399 - - gmx:100795200 466.463