Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01393 ATGAGGACATCTTCTTTTACTGACATGCTCTCCAACAACAACAGTAACATGACTTTGGAGGATCATAATTGGGGAACTTCTTCTGAACTTAATCATCAAGTTGGACTTGATGTTCCCAAATTCAAGTCTGTTCAACCTCCTTCACTGCCCCTCTCTCCCTCACCAATTTCCCCTTCTTCTTACTTAGCCTTTTCATCTGGTTTCAGCCCATCTGAGTTCTTGTACTCATCTTTGTTTCTTTTTTATCCAAGTATTTTTGCATCGCCTACTACGGAGACTTTTGCTGGCGAGAGCTTTAACTGGAAGAACAGTTCAGGTGAGGAAGATGAGAAAAACTACTCTGACTTCTCTTTCCAAACACAAGCAAAGCCTGCACCTGTCTTTCAATCTTCCTCAAACATGTTTCAAGTGGTAAGCACTATAATCTCACAACAGCAGGAACCACTTAAGAAACAAGACATATGGAAATTCAATGAACCTATAAAGAAAACTGTTTTTTCATCAACAAAATCTGAATATCCATCAACTCAGAGCTTTTCCTCAGAAATGGCACCAAGCAAACCAGAAATACAAAATAATTCAGTTTCTGGGTCTGGCCAGTTTAACTACACTAATGCATCTCAGTCTGTTAGAGAACAAAGGAGATCAGAAGATGGGTACAACTGGAGAAAATATGGACAGAAACAGGTAAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACACACCCAAATTGCTCAATGAGGAAGAAAGTTGAGAGATCTTTGGATGGTCAAATTACTGAAATAGTATATAAGGGAAATCATAACCACCCCAAACCCCAGTCTACTAGAAGATCTAGCTCTCAACCAATTCATCAACCTTCTTCATCCTGCACCAACTCAGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGAGCCTGTCTCTATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGACTTCGAACAAACACCACAAACTACTTATTCTGGAGGAGATGAAGATGACCTTGGACCAGAGGCCAAAAGATGGAAGGGAGATAATGACTATGATGGCTATTCAGCCTCAGATAGTAGAACTGTTAGAGAGCCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATACTTGATGATGGCTATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGGAAACATATTGAGCGAGCGGCACATGATATCAAAGCTGTGATCACGACTTATGAAGGGAAACACAACCATGATTTACCTGCTGCACGTGGTAGTGCAGGTTATAACATGAACAGAAATTCTCTGAACAGCAACACCAGCAATGTACCAGCACCTATAAGGCCCTCAGCAGTGAACCGTTATTCTAGCTCATCTAGTTTGACAAGTTCACTTTACAATACTAGGCTTCCAACAACTGGAAATCAAGAATCATTTCCACTGGACATGTTGCAGAGTCCTGGAAATTTGGGGTATTCAGCTCTTGGCAGATCAATGGGTTCCTATACCAATCATGCACAATACTCAGATGCAGCATACTCAAAGGCCAAGGAAGAGAGGAATGATGACTCATTCCTTCAGTCATTTCTGTCAAAGGACTTCTAA 1677 0.4109 MRTSSFTDMLSNNNSNMTLEDHNWGTSSELNHQVGLDVPKFKSVQPPSLPLSPSPISPSSYLAFSSGFSPSEFLYSSLFLFYPSIFASPTTETFAGESFNWKNSSGEEDEKNYSDFSFQTQAKPAPVFQSSSNMFQVVSTIISQQQEPLKKQDIWKFNEPIKKTVFSSTKSEYPSTQSFSSEMAPSKPEIQNNSVSGSGQFNYTNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCSMRKKVERSLDGQITEIVYKGNHNHPKPQSTRRSSSQPIHQPSSSCTNSGISDQSVVTLGNPQMEPVSIQEDSSASVGEEDFEQTPQTTYSGGDEDDLGPEAKRWKGDNDYDGYSASDSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHIERAAHDIKAVITTYEGKHNHDLPAARGSAGYNMNRNSLNSNTSNVPAPIRPSAVNRYSSSSSLTSSLYNTRLPTTGNQESFPLDMLQSPGNLGYSALGRSMGSYTNHAQYSDAAYSKAKEERNDDSFLQSFLSKDF. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01393 558 SMART WRKY_cls 385 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 SMART WRKY_cls 216 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 SUPERFAMILY WRKY DNA-binding domain 377 445 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 133 464 IPR044810 GO:0003700
Seca2g01393 558 MobiDBLite consensus disorder prediction 460 496 - -
Seca2g01393 558 FunFam WRKY transcription factor 205 276 - -
Seca2g01393 558 FunFam WRKY transcription factor 33 372 438 - -
Seca2g01393 558 Gene3D WRKY domain 202 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 Gene3D WRKY domain 372 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 ProSiteProfiles WRKY domain profile. 380 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g01393 558 ProSiteProfiles WRKY domain profile. 211 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 MobiDBLite consensus disorder prediction 266 365 - -
Seca2g01393 558 MobiDBLite consensus disorder prediction 173 244 - -
Seca2g01393 558 SUPERFAMILY WRKY DNA-binding domain 212 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 Pfam WRKY DNA -binding domain 386 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g01393 558 MobiDBLite consensus disorder prediction 343 365 - -
Seca2g01393 558 MobiDBLite consensus disorder prediction 173 210 - -
Seca2g01393 558 MobiDBLite consensus disorder prediction 271 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01393 Seca-Chr2 23441894 23444402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01393 211 554 WRKY Transcription Factor Family AT2G38470 54.294 2.28e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g01393 WRKY 3.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01393 K13424 - gmx:100776837 809.29