Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01355 ATGGAAGGCAATAATAGAGAGGAGATTGTGGATGTTGGATCAGTGGTAAAAGCTGTTTCTGCTGACGACGGTGACGCCCCTCTTTACAACCTCGAAAGCCTCTGCATGCGTTGTGGTCAAAACGGGATTACAAGGTTTTTATTGACTTTAATTCCTCACTTTAGGAAGATTTTGTTGTCAGCTTTTGAATGTCCTCACTGTGGTGAAAGAAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCACGTGGTTGTTATTACTCTTTGGAGATCCCATCAGGTGAACAGGAGATGCTCAATCGACAAGTGGTTAAATCAGAATCTGCTACCATTAAGATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTAATGCGGGTTGCTGATGAACTTCGGGCCCTCCAAGAAGAACGCAGAAAAGTGGCTCCAGAGACTGCTGAAGCAATTGATCAGTTCTTGGTCAAATTGCGAGCCTGTGCAACAGGGGATTCGTCCTTCATGTTTATTCTTGATGATCCTGCAGGAAACAGCTTCATTGAAAACCCGTTTGCACCGTCATCTGATCCATCCCTAACTATCAAGTTTTATGAGCGAACTCCTGAGCAACAAGCATCATTGGGATATCTTGTTGATTCTACACAAATTGAAGGAACTCGTGATGAAGCACCAGAAGGGGGAGAAGCTGTGGCTGCTAATCAAATGAGGAGAGAACCACATGGGTCAGTAGGGGCAACAGCTGGTCATCGAGCCATTGCACAAAGTAATAGTGCAGAAATTGCAGAAGCCTTGTTTCGATATATTGCACCAGAAGAGGTGATGACTTTCCCATCAACTTGTGGAGCTTGTGCCAGTTCGTGCGAAACACAAATGTTCGTCACCAGTATCTTTTTACTATTTTGCATATTGCCATTTGAATATGCTTTGGTTGTGTTTGTTACATTTATTTACTATTATCTATCATTTTAG 1002 0.4321 MEGNNREEIVDVGSVVKAVSADDGDAPLYNLESLCMRCGQNGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCYYSLEIPSGEQEMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRVADELRALQEERRKVAPETAEAIDQFLVKLRACATGDSSFMFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTQIEGTRDEAPEGGEAVAANQMRREPHGSVGATAGHRAIAQSNSAEIAEALFRYIAPEEVMTFPSTCGACASSCETQMFVTSIFLLFCILPFEYALVVFVTFIYYYLSF. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01355 333 Coils Coil 129 149 - -
Seca2g01355 333 Gene3D ZPR1, zinc finger domain 25 78 IPR042452 -
Seca2g01355 333 Gene3D ZPR1, zinc finger domain 280 317 IPR042452 -
Seca2g01355 333 SMART zpr1 33 193 IPR004457 GO:0008270
Seca2g01355 333 FunFam Zinc finger protein ZPR1 23 78 - -
Seca2g01355 333 Pfam ZPR1 zinc-finger domain 33 192 IPR004457 GO:0008270
Seca2g01355 333 PANTHER ZINC FINGER PROTEIN ZPR1 15 307 IPR040141 -
Seca2g01355 333 NCBIfam ZPR1 zinc finger domain 35 217 IPR004457 GO:0008270
Seca2g01355 333 Gene3D ZPR1, A/B domain 79 220 IPR042451 -
Seca2g01355 333 FunFam zinc finger protein ZPR1 79 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01355 Seca-Chr2 22856633 22862175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01355 4 307 C2H2 Transcription Factor Family AT5G22480 71.803 1.53e-157 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01355 K06874 - gmx:100798741 543.502