Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01344 ATGGATGGAATGGCAGATCTCGCTAGTCATGGGATTCTTGAGCGTGATATTGAGCAAGCACTCATTGCTTTAAAGAAAGGGACTCAATTAATAAAGTATAGTCGAAAGGCCAAGCCAAAAGTTTGCCCATTCAGACTCTCCCTGGATGAAACGACATTGATTTGGATTTCTCATAAAAAGGAAAGGAATTTGAAATTATCTTCAGTTTCACGTATTATTCCAGGACAAAGAACTGCTGTCTTTAGAAGATATTTACAACCAGAAAAAGATTATCTTTCGTTTTCACTTGTTTATAATAAAGGGGAGCGGACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTGTGGTTTGCAGGCCTTAAGACATTAATTTCTGGTGGAAGGCATAATAGACTTACTGGAAGTGAATTATTTGATGATGGTGTTGATTTTATTTCAATTAGTCGTCCTTTCGGTGCAGCACTAGAGTTTGCTTCAAGCATTGCTCGTGGTAGGGTCTCTATTGATTTAGCTTCTAGTGAGTCTTCATTGTGTTGGGCAAGCCCAGATGTGGGGTTAGAGCGTGCAAATATGCAACCAAGGACAAGTATTGGAGATGGTTTTCGTGTTAGTGTTTCAAGTGCACATAGTTGTTCAAGTGGAGGATCAGGACCTGATGACATAGAATCACTAGGTGATGTTTACATATGGGGAGAGGTTTGGGTAGATGGTGCTTCACCTGATGCATATGGTAGCACTTCTCCATCCCCTTCCACAATAGATGTTTTGATTCCTAAGCCTTTAGAGTCAACTGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTACGTCATATGGCTCTAGTTACTAGGCAAGGAGAGGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGATTAGGTCATGGAATTGATAAAGATTTTGGTCGCCCTCAACTTGTTGATGTTCTGGCGGTTACAAATATAGAGACAGTTGCATGTGGAGAAAATCATACATGTGCTGTATCTATATCAGATGACCTTTTTTCATGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTAGTGGTCCTTTAGAAGGACATCAAGTTATATCTATAGCATGTGGCACATGGCATTCAGCATTAGCAACTTCCAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGAGAGAGTGTGCCTTATCCTAAGGAAGTACAGTTATTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACAGCAGCTATTGTAGAGGTTATTTTTCAGTCTGGTTCAAATGTTTCATCTAGAAAGCTTTTCACTTGGGGAGATGGTGATAAATACCGTTTGGGACATGGAAACAAGGAAACATATCTTCAACCTACTTGTGTCTCTGCATTGATTGAATATAATTTCCACCAAATAGCTTGTGGACATACTATGACTGTTGCCCTTACTACATCTGGTCATGTGTTTACTGTTGGAGGCACTGAAAATGGTCAACTTGGAAATCCTTTATCTGATGGTAAAATTCCTATCTTAGTACAAGACAAGTTGGTAGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTTCTGCCTTAACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGATTTAGAGGATAGAAAATCTCCAACATTGGTGGAAGCATTGAAAGATAGGCATGTGAAAAATATCTCATGTGGATCAAACTTCACATCTTGTATATGTATCCATAAATGGGTCTCTGGAGTTGACCAATCTGCTTGTACTGGTTGTAGACAACCATTTGGTTTTACAAGAAAAAGGCATAATTGTTATAATTGTGGATTAGTACATTGTCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCAGCATTGGCTCCAACACCTGGAAAACCTCATCGTGTGTGTGATTCTTGTTACAATAAACTTAAAGCTGTTGAGGCAGGTACTACTACTTCCAATTTTAATAGAAAAGTTACTACCCAACCTCGTAGTTCCATAGATGGCAAGGAAAGATTATTTGGTCAAGGAGAAATAAGATCTTCAAGAATTTTTCTGTCTTCTATGGCAGAACCACTAAAATTCCTTGAGATGAGGACTAATAATAAGCATGGAAACAAGTATGATTATTCTTCCTTGGTTCCTACTTCGCAAGTTCCATCACTATTACAATTGAAAGATATGTCCATACAAAATGTTTTGAAGCCTGTTATTCCTCCAAGTCCACCACCAACTCCACCTCTTAATTCAAGACCAACATCCCCTTATCCAAGAAGGCCAAGCCCACCACGTTCTGGAACTCCTGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACAAATGAGATTTTGAATCAAGAAGTCTCAAAATTACAGAACCAAATTCGAAGTTTGAAGCAGAAAAGTGACATGGAAATTCAGAAGCTTCAGAAAAACATTAAGGAAGGTAACTTGTTAGCTACAAAGGAAGCATCTAAGCAGAAAGCAGCGAAAGAATTTTTTGACTCCATGATAGATCAGTTGAAGGAAATAGCAGATAAGTTACCACCAGAAGTTTCAGACACCGAAAATTTCAAAACCATGCTTACTCGAGCTGAAGATTTTCTAAAAGAAAATTTAGAATCTAAAACATCTTCCTCACCATCAAACTCAGAGTGTGAGCAACAAAATGCACCTGCTTTAAATAGTTGCTCTTCTAAACTGCAAGAACATAAAATAGAAGAAACTAATGAAGCTGCAGGAGTTGACTCATCTCAAGATGGAGGGAATGTCCTTCAAGAAAGTGATAAATCATCTTTATCTAATAATGAAGTAGTAGTGCATCCACAAAGCTCTGAAAATGATTCAAAATCACTAGAGTCTTCAAGATCAAGGAGAGAAGGAGAGACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTGACACTAATAGTAAAGCCTGGTGGTATCAAAGTTTTCAAGCGAGTGAGATTCAGTAAGCGAAGATTCCATGAACATCAGGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGCTTAGGAAATATAGTCCTCAAGCTACAAATCCCGAAAGCACAGTGCCTGGCATCCCACCACCTAGTGATGAAAATTGTGAGGCAGACCTTTCATAA 3243 0.3873 MDGMADLASHGILERDIEQALIALKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISHKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLVYNKGERTLDLICKDKAEAEVWFAGLKTLISGGRHNRLTGSELFDDGVDFISISRPFGAALEFASSIARGRVSIDLASSESSLCWASPDVGLERANMQPRTSIGDGFRVSVSSAHSCSSGGSGPDDIESLGDVYIWGEVWVDGASPDAYGSTSPSPSTIDVLIPKPLESTVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVDVLAVTNIETVACGENHTCAVSISDDLFSWGDGAYNVGLLGHGTDVSHWIPKRISGPLEGHQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVPYPKEVQLLSGLKTIKVACGVWHTAAIVEVIFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHVFTVGGTENGQLGNPLSDGKIPILVQDKLVGEFVEEISCGAHHVSALTSRSELYTWGKGANGRLGHGDLEDRKSPTLVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEAGTTTSNFNRKVTTQPRSSIDGKERLFGQGEIRSSRIFLSSMAEPLKFLEMRTNNKHGNKYDYSSLVPTSQVPSLLQLKDMSIQNVLKPVIPPSPPPTPPLNSRPTSPYPRRPSPPRSGTPGFSRSLIDSLRKTNEILNQEVSKLQNQIRSLKQKSDMEIQKLQKNIKEGNLLATKEASKQKAAKEFFDSMIDQLKEIADKLPPEVSDTENFKTMLTRAEDFLKENLESKTSSSPSNSECEQQNAPALNSCSSKLQEHKIEETNEAAGVDSSQDGGNVLQESDKSSLSNNEVVVHPQSSENDSKSLESSRSRREGETQVIEQFEPGVYVTLIVKPGGIKVFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYSPQATNPESTVPGIPPPSDENCEADLS. 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01344 1080 MobiDBLite consensus disorder prediction 946 999 - -
Seca2g01344 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 341 390 IPR000408 -
Seca2g01344 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 459 505 IPR000408 -
Seca2g01344 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 288 336 IPR000408 -
Seca2g01344 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 508 557 IPR000408 -
Seca2g01344 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 394 443 IPR000408 -
Seca2g01344 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 562 609 IPR000408 -
Seca2g01344 1080 SUPERFAMILY PH domain-like 16 126 - -
Seca2g01344 1080 FunFam PH, RCC1 and FYVE domains-containing protein 1 198 448 - -
Seca2g01344 1080 Pfam Pleckstrin homology domain 18 126 IPR001849 -
Seca2g01344 1080 MobiDBLite consensus disorder prediction 910 930 - -
Seca2g01344 1080 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 60 869 - -
Seca2g01344 1080 Pfam Transcription factor regulating root and shoot growth via Pin3 999 1053 IPR013591 -
Seca2g01344 1080 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 617 679 IPR017455 -
Seca2g01344 1080 CDD FYVE_like_SF 622 675 - -
Seca2g01344 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 685 IPR013083 -
Seca2g01344 1080 Gene3D - 15 133 IPR011993 -
Seca2g01344 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 394 IPR000408 -
Seca2g01344 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Seca2g01344 1080 CDD PH_PLC_plant-like 15 127 - -
Seca2g01344 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Seca2g01344 1080 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 433 443 IPR000408 -
Seca2g01344 1080 SMART fyve_4 611 680 IPR000306 GO:0046872
Seca2g01344 1080 PRINTS Chromosome condensation regulator RCC1 signature 498 516 IPR000408 -
Seca2g01344 1080 PRINTS Chromosome condensation regulator RCC1 signature 556 577 IPR000408 -
Seca2g01344 1080 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Seca2g01344 1080 PRINTS Chromosome condensation regulator RCC1 signature 290 306 IPR000408 -
Seca2g01344 1080 PRINTS Chromosome condensation regulator RCC1 signature 397 411 IPR000408 -
Seca2g01344 1080 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Seca2g01344 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 446 IPR000408 -
Seca2g01344 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 339 IPR000408 -
Seca2g01344 1080 MobiDBLite consensus disorder prediction 909 930 - -
Seca2g01344 1080 ProSiteProfiles BRX domain profile. 999 1054 IPR013591 -
Seca2g01344 1080 MobiDBLite consensus disorder prediction 948 986 - -
Seca2g01344 1080 Gene3D - 201 453 IPR009091 -
Seca2g01344 1080 Gene3D - 454 625 IPR009091 -
Seca2g01344 1080 Coils Coil 810 844 - -
Seca2g01344 1080 MobiDBLite consensus disorder prediction 769 806 - -
Seca2g01344 1080 MobiDBLite consensus disorder prediction 1052 1080 - -
Seca2g01344 1080 Pfam FYVE zinc finger 613 679 IPR000306 GO:0046872
Seca2g01344 1080 SUPERFAMILY RCC1/BLIP-II 227 614 IPR009091 -
Seca2g01344 1080 Pfam Transcription factor BRX N-terminal domain 859 894 IPR027988 -
Seca2g01344 1080 SUPERFAMILY FYVE/PHD zinc finger 613 682 IPR011011 -
Seca2g01344 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 457 508 IPR000408 -
Seca2g01344 1080 MobiDBLite consensus disorder prediction 771 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01344 Seca-Chr2 22691221 22705586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01344 996 1078 Major Intrinsic Protein MIP AT1G31880 33.735 4.61e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01344 - - gmx:100779684 1600.49