Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01302 ATGCAAAAAGTGCTACCAGAAATGGAACAGAAGGGAAGTGTGCTTATGCAAAGATATGAACTAGGGAGATTATTAGGCCAAGGAACCTTTGCGAAGGTCTACCATGCTAGGAACCTTAAAACTGGCATGAGTGTGGCAATTAAGGTAGTTGACAAAGAAAAGATTTTGAAAGTTGGGATGATTGATCAGATTAAGCGTGAAATTTCGGTGATGAGACTAGTCAGACATCCACATGTGATTGAGCTTTATGAGGTAATGGCCAGTAAAACCAAAATTTACTTTGTCATGGAGTATGCAAAGGGTGGTGAGCTCTTCAACAAGATAGCCAAAGGAAGGCTCAAGATGGATGTTGCTAGGAGATATTTTCAGCAACTGATTAGTGCAGTTGACTACTGCCATGGCAGGGGTGTGTGTCATCGAGATTTAAAACCCGAAAATCTACTATTGGATGAAAATGAGAATTTGAAGGTCTCAGATTTTGGGTTGAGTACCCTTTCTGAATCTAAGTGCCAAGATGGATTACTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGTTATGATGGGTGCAAAGCTGATATATGGTCTTGTGGGGTAATCTTGTATGCTCTATTGGCTGGTTATCTTCCGTTTCATGATTCAAATCTGATGGAGATGTACAGAAAAATTGCTAAGGGGGAATTCAAATTTCCTAAATGGTTTCCACTGGAGGTTCGCCGGTTATTGTCCAAAATATTGGATCCAAACCCAAAAACCAGGATATCAATAGCCAAGATTATGCAAAATTCTTGGTTTAAAAAGGGGTTGGAGAAGCCAGTTATTGTTGAGACCAGAAACAAAGAAGAATCTCCTCTGGATGCTGATGGAGTCCTTGAAGTGACTGAAAATGTTGGTCCTATTGCAGAGTCAAAGCAAGAACAGGCAAAGCTTTGTAATTTAAATGCTTTTGATATCATCTCCTTCTCAACTGGCTTTGATCTATCTGGTTTGTTTGAGGACACAGTTCATAAGAAAGAGATGCGGTTTACATCTAACAAGCCTGCCTCAACTATAATCTCAAAGTTGGAAGAAATTTGCAAGTGTTTTCACTTGAAAATAAGGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAAGTTCCAAGGAAGGGAGAAAAGGGACCCTGGGAATTGATGCTGAGATTTTTGAGATTACCCCACACTTCCATCTGGTGGAATTTAAAAAGTCCAATGGTGATACAGTGGAGTACCAGCAGCTTCTGAAGCAGGACATTAGACCAGCACTTAAGGACATTGTTTGGGCCTGGCAAGGAGAACAACCACAGCAACTCCAACATGAAGCAGTGCAGTAA 1371 0.4077 MQKVLPEMEQKGSVLMQRYELGRLLGQGTFAKVYHARNLKTGMSVAIKVVDKEKILKVGMIDQIKREISVMRLVRHPHVIELYEVMASKTKIYFVMEYAKGGELFNKIAKGRLKMDVARRYFQQLISAVDYCHGRGVCHRDLKPENLLLDENENLKVSDFGLSTLSESKCQDGLLHTTCGTPAYVAPEVINRKGYDGCKADIWSCGVILYALLAGYLPFHDSNLMEMYRKIAKGEFKFPKWFPLEVRRLLSKILDPNPKTRISIAKIMQNSWFKKGLEKPVIVETRNKEESPLDADGVLEVTENVGPIAESKQEQAKLCNLNAFDIISFSTGFDLSGLFEDTVHKKEMRFTSNKPASTIISKLEEICKCFHLKIRKKDGGLFKLESSKEGRKGTLGIDAEIFEITPHFHLVEFKKSNGDTVEYQQLLKQDIRPALKDIVWAWQGEQPQQLQHEAVQ. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01302 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 436 - -
Seca2g01302 456 FunFam Non-specific serine/threonine protein kinase 316 440 - -
Seca2g01302 456 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Seca2g01302 456 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Seca2g01302 456 SUPERFAMILY Protein kinase-like (PK-like) 15 283 IPR011009 -
Seca2g01302 456 Gene3D Phosphorylase Kinase; domain 1 8 98 - -
Seca2g01302 456 Pfam NAF domain 320 376 IPR004041 GO:0007165
Seca2g01302 456 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01302 456 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01302 456 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01302 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Seca2g01302 456 CDD CIPK_C 322 436 - -
Seca2g01302 456 FunFam Non-specific serine/threonine protein kinase 9 302 - -
Seca2g01302 456 Gene3D Kinase associated domain 1, KA1 317 441 - -
Seca2g01302 456 Gene3D Transferase(Phosphotransferase) domain 1 99 304 - -
Seca2g01302 456 CDD STKc_SnRK3 18 272 - -
Seca2g01302 456 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01302 Seca-Chr2 21470232 21474214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01302 8 448 CBL-interacting serine-threonine protein kinases AT5G58380 65.934 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca2g01302 Pkinase 4.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01302 K07198 - gmx:100803787 762.681