Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01296 ATGAGAGAGGCACAGAACGACACCGTTGTGGCAGAAGTAGCAGAAACAGAAACTGAGACTAAAACGACGAAGGATGAGTTGCCACGCGACGTCGTTTTATTCGGGAAATACGAACTCCGAAGATTGCTTGGCGTTGGCGCGTCGGCGAAGGTGTACCACGCGACGAACGTTGACACAGGACAGAGCGTGGCAATGAAGGCAGTGAGCAAGCACAAGGTTTTCTCCGGCGGTTTCGCGGCGAACGTGGAACGCGAGATCTCAATCATGCGCCGTCTTCACCACAAGAACATCGTCGAACTCTACGAGGTCCTCGCCACCAAGACGAAGATTTACTTCGTCGTTGAGTTCGCCGCCGGCGGAGAGCTCTTCCAGGAGGTCGCCGGCAAGGGACGATTAACCGAAGACCACGCCCGGAGATACTTCCGGCAACTCATCTCCGCCATCAATCACTGCCACTCACGCGGCGTTTTCCACCGCGACCTGAAGCTCGACAACCTCTTGCTCGACGAGAACGGCGACCTGAAGGTGTCGGATTTCGGGTTAAGCGCCGTGAAGGAGCAGATCCGACCCGACGGATTGCTCCACACCGTTTGCGGAACCCCTTCCTACGTGGCACCTGAGATTCTCGCGAAAAAGGGCTACGACGGAGCGAAAGTGGACATTTGGTCGTGCGGCGTCGTTTTATTCGTCCTCACGGCTGGATATTTGCCCTTCAATGATTACAATATTACCGTTCTGTACCGCAAGATTTACCGTGGTCAATTTCGCTTCCCGAAATGGACGTCCCCTGATCTGAGGAACCTCTTATCACGTTTATTGGACACGAATCCCAAGACGAGGATCACCGTTGATGAGATTTTCCAAGACCCATGGTTCAATGCGGGTGGATACCGGCCCGACCGGGTTTTATTTAAGGAGCGGGAGTTTTTGGAGGAGACTCGAACCGGGTTCAAGTCTTTGAACGCGTTTGATTTGATATCGTTCTCAACTGGGTTGGACATGTCGGGTCTGTTTTCGGGCCCAATTGTGTCGGATTCAGTGGAACGGGTCGTTTCGAGGGAGGAACCGGAGAGGATCATAGAGAGGGTGGAGGAGGTGGCAAAAGGGGAAAGGGTGGTGGTGAAGAGAAAGGAGAATAGTGCAAAGGTGGAAGGGCAGGATGGTCATTTGATTGCTCTTTTGGTGGTTTACCGGTTAACGGATGAGTTGGTTGTGATTGAAGTGAAGAGGCGCCAAAGAGGAGGGGAATGTGGCCCGGAATTTTGGAAAGATAAATTGCGACCTCTGCTTCATGAATTGGCTCATAAACAGGAAGTGCCGGTCTCTCGGTGA 1332 0.53 MREAQNDTVVAEVAETETETKTTKDELPRDVVLFGKYELRRLLGVGASAKVYHATNVDTGQSVAMKAVSKHKVFSGGFAANVEREISIMRRLHHKNIVELYEVLATKTKIYFVVEFAAGGELFQEVAGKGRLTEDHARRYFRQLISAINHCHSRGVFHRDLKLDNLLLDENGDLKVSDFGLSAVKEQIRPDGLLHTVCGTPSYVAPEILAKKGYDGAKVDIWSCGVVLFVLTAGYLPFNDYNITVLYRKIYRGQFRFPKWTSPDLRNLLSRLLDTNPKTRITVDEIFQDPWFNAGGYRPDRVLFKEREFLEETRTGFKSLNAFDLISFSTGLDMSGLFSGPIVSDSVERVVSREEPERIIERVEEVAKGERVVVKRKENSAKVEGQDGHLIALLVVYRLTDELVVIEVKRRQRGGECGPEFWKDKLRPLLHELAHKQEVPVSR. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01296 443 FunFam Non-specific serine/threonine protein kinase 117 299 - -
Seca2g01296 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 28 411 - -
Seca2g01296 443 CDD CIPK_C 321 430 - -
Seca2g01296 443 SMART serkin_6 37 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01296 443 SUPERFAMILY Protein kinase-like (PK-like) 33 300 IPR011009 -
Seca2g01296 443 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Seca2g01296 443 Pfam NAF domain 318 375 IPR004041 GO:0007165
Seca2g01296 443 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Seca2g01296 443 Gene3D Transferase(Phosphotransferase) domain 1 30 319 - -
Seca2g01296 443 Gene3D Kinase associated domain 1, KA1 320 436 - -
Seca2g01296 443 ProSiteProfiles Protein kinase domain profile. 37 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01296 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Seca2g01296 443 Pfam Protein kinase domain 37 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01296 443 FunFam Aurora kinase A 30 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01296 Seca-Chr2 21257118 21258449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01296 32 427 CBL-interacting serine-threonine protein kinases AT2G30360 58.025 1.18e-170 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca2g01296 Pkinase 2.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01296 - K12761 gmx:100788245 613.994