Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01279 ATGCAGCGCCGTTTTCTTGACACCACCGAGCTAACCATGCCACCGTCTTATGGGAACAACAACACCCATGAACCTTTCATCAACGACACCAACTTCGACACCAACATGGTGATCATATTAGCAGCACTTTTGTGCGCATTGATATGTGCCTTGGGTTTGAACTCCATAGCGCGTTGTGCTCTGCGTTGTAGCCGGAGATTCTCCCAAGAGACGCCGGAACAAGCGGCGGCGAGGCTCGCCGCAACGGGGCTGAAGAAACGGGACCTCAGCCAGATTCCGGTAGCGGTGTACGGCTACGGAGAGAATATTCCGGCGACGGAGTGCCCCATATGCTTAGCGGAGTTCGAGAAAGGGGACAAGCTTCGAATGCTGCCAAAGTGCAATCACGGGTTTCATGTGAGATGCATAGACACGTGGTTGGTGTCGCATTCTTCTTGCCCCAATTGTCGCCATTCACTGCTAGAGAAACAACAACCTACTACCGTTTCTTCTTCGACTTCTGAGGTCGCCGGAGATGGGTTGCCGGAAAATGGATCCGGCGGGGGAAGCAGCGTCGCGGTGACTGTCGAGCAGGCAAGTTGA 582 0.5412 MQRRFLDTTELTMPPSYGNNNTHEPFINDTNFDTNMVIILAALLCALICALGLNSIARCALRCSRRFSQETPEQAAARLAATGLKKRDLSQIPVAVYGYGENIPATECPICLAEFEKGDKLRMLPKCNHGFHVRCIDTWLVSHSSCPNCRHSLLEKQQPTTVSSSTSEVAGDGLPENGSGGGSSVAVTVEQAS. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01279 193 SMART ring_2 108 149 IPR001841 -
Seca2g01279 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 160 IPR013083 -
Seca2g01279 193 SUPERFAMILY RING/U-box 101 157 - -
Seca2g01279 193 PANTHER RING-H2 FINGER PROTEIN ATL78 3 167 IPR044602 GO:0016567|GO:0016740
Seca2g01279 193 MobiDBLite consensus disorder prediction 160 193 - -
Seca2g01279 193 Pfam Ring finger domain 107 150 IPR001841 -
Seca2g01279 193 CDD RING-H2_EL5-like 107 150 - -
Seca2g01279 193 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01279 Seca-Chr2 20758548 20759129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01279 27 169 C3H Transcription Factor Family AT3G10910 62.092 1.30e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01279 K19040 - gmx:100810195 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01279 2 20758548 20759129 Seca2g01279 2 20758548 20759129 ECH