Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01278 ATGGGGTGTTTCACTGTATTGAAGGGCAAGAAGAAAAAGCCTGATCAGATTGTGTATGTAAAACGTGTAAGCCATAATGAGCATGTACCTACGGTACTGCCTGAACCTCAAACTCAAACTCGCTCACTCCAGTCTGCACCTCCTAGTTTTAGGACCAGAGTGAAACCCATTCAACCCACCAATAGAGTCACTAACAATAGAATGCGAGCATTATCTGCTCCATCAACTCTTGATGCAGCAGAACAAGATGCTTTGGCTTCAGTTGAGTATGAGGAACAAGAAGAATCAAAACACCGAGCTGCATCAATGAAGGAGCAGCATTCATCTAGTCCACAACCTTTACCACTTCCATCTCCTCATGGTGGTGGTGCACTGAAGGCTATTGGCAGCTTTAAATTGGGAACAGCTAGTGGTCCTCTAAATGCTAGTGGACCTTTGCCACTCCCACCTACTGGGTCACTCCGGAACTTTCTGTATGAGGACATTGCTGCTGCTTGCCACCATTTCTCTTCAGATCGATGCATGTCAGAATGTCTTTCATCCACCATATATAAAGCTTCCTTTGGAGATGATGTTTCTAGTACAAAGAAGTTTGAAGCCACTGTCACCCGCCTTCACCCATCATCTCAGGGCTTGAAGGAATTCATAAATGAGGTTAATACTCTTGCATCTTTGCAACATCCAAACCTCTGTAAATTGCTAGGATTTCATGCACGTGATGGTTCAGAACATAGAATGTTGGTTTATGAGAGGCTTTACCATGGAAGCTTGGACCGCTTATTGTACGGGAGATCTGATGGGCCATCAATTGATTGGAACACAAGAATGAAAATTGCAATATGTGCTGCACAAGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTTCAGGCAATGTATAATGAATTCTCCACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCCGAGGAAGAGATTTCAAGCAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAAGGAATGCTCACTCCGAAGAGCAACGTATGGAGCTTTGGAATTTTTCTTCTGGAGCTACTTACAGGAAGAAAGAATCTTGATAGCCGTCATCCCAAAGAAGAAAGGAATTTAGTAAAGTGGAGCAAGCCTTTCCTAGCTGATAATTATCGTCTGTCATTGATCATGGATCCTCAACTCAAAGGTCGCTTTCCATCCAAAGCAGCAAGAACAATAGCTGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGAAAGACCCACCATGAGAACTGTTGTTGAGCATCTTAAAACAATACAAGATTTGAAGTACTCTTGCAGGTTCCCACTACAAGAACCAGCACAAATCTCTGGAAAACAGATGTCAAGATCGCCGAGTCTTAATGGCATCGTCTGCCCTCCGCCTAGGTTGAGTTTCTCTCCATCACCACCACCATCAGGAGCCCCAGTATCTGTGTCACCTCCAAGATGGTCTGGAGTGCCTATCCTCCTTCCACCTCGCGCTTGTTCCTCAACTCTCTCTTTGGAGGAGCTTGATAGGCAGGAAAGCCGCAAGTCATCATCCTCAGCCTCTAGGAGGGCTAGTGTTGAAGGATTTTGA 1644 0.4446 MGCFTVLKGKKKKPDQIVYVKRVSHNEHVPTVLPEPQTQTRSLQSAPPSFRTRVKPIQPTNRVTNNRMRALSAPSTLDAAEQDALASVEYEEQEESKHRAASMKEQHSSSPQPLPLPSPHGGGALKAIGSFKLGTASGPLNASGPLPLPPTGSLRNFLYEDIAAACHHFSSDRCMSECLSSTIYKASFGDDVSSTKKFEATVTRLHPSSQGLKEFINEVNTLASLQHPNLCKLLGFHARDGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSKPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSERPTMRTVVEHLKTIQDLKYSCRFPLQEPAQISGKQMSRSPSLNGIVCPPPRLSFSPSPPPSGAPVSVSPPRWSGVPILLPPRACSSTLSLEELDRQESRKSSSSASRRASVEGF. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01278 547 ProSiteProfiles Protein kinase domain profile. 169 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01278 547 MobiDBLite consensus disorder prediction 522 547 - -
Seca2g01278 547 Pfam Protein tyrosine and serine/threonine kinase 184 444 IPR001245 GO:0004672|GO:0006468
Seca2g01278 547 SUPERFAMILY Protein kinase-like (PK-like) 147 455 IPR011009 -
Seca2g01278 547 MobiDBLite consensus disorder prediction 90 104 - -
Seca2g01278 547 PANTHER OS01G0588500 PROTEIN-RELATED 100 448 - -
Seca2g01278 547 MobiDBLite consensus disorder prediction 463 505 - -
Seca2g01278 547 MobiDBLite consensus disorder prediction 484 499 - -
Seca2g01278 547 MobiDBLite consensus disorder prediction 35 54 - -
Seca2g01278 547 Gene3D Phosphorylase Kinase; domain 1 150 250 - -
Seca2g01278 547 Gene3D Transferase(Phosphotransferase) domain 1 252 456 - -
Seca2g01278 547 MobiDBLite consensus disorder prediction 73 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01278 Seca-Chr2 20699400 20704036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01278 148 448 Receptor kinase-like Gene Family AT4G02010 37.134 4.36e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Seca2g01278 PK_Tyr_Ser-Thr 4.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01278 - - gmx:100809117 955.666