Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01273 ATGATGCAATTCAGCATATGTTTGTTGTTTCTGATTCTCTTTTCTCCAGTGCTCTCTGTGGACCCTGGTTTCAATGATGATGTGTTGGGGTTGATTGTCTTCAAGGCTGGTTTGCAAGACCCAAAGCATAGATTGTCTTCATGGAATGAAGATGATAATAGTCCTTGCAACTGGGAAGGTGTCAAATGTGATCCTTCCACCAATAGGGTCTCTGCTCTTGTCCTTGATGGGTTTTCTCTTTCTGGGCATGTTGATAGAGGCCTCTTGAGATTGCAATTCCTTCAAATTCTCTCACTTTCTGGGAATAACTTCACAGGGCCCATAAACCCTGATCTTCCTCGCCTTTGGAGTTTGCAAGTTGTTGACTTGAGTGATAACAATCTCTCTGGGACAATCCCAGAAGGGTTTTTCCAACAATGTGGGTCTCTGAGAGCAGTTTCCTTTGCAAAGAACCACCTTACAGGTAAGATTCCTGATTCCTTGAGCTACTGCTCCACATTGACAACTGTTAACTTCTCCTCTAATAAGCTTTATGGGGAATTGCCATCTGGGCTGTGGTACTTGAGGGGTCTGCAGTCACTTGATCTGTCAAATAACTTGCTTGAGGGAGAGATTCCTGAAGGAATTCAGAATCTGTATGATATGAGGGAATTGAGTCTACAGAAGAATAGATTCACTGGCAAGCTTCCTGGGGATATTGGAGGCTGCATACTTTTGAAATCACTTGACTTGAGTGATAATTTTCTCTCTGGGGAACTGCCTCATTCAATGCAAAGACTCACATCATGCACATCACTCAGTTTGCAGGGAAATTCATTCACAGGAGGCATTCCTGACTGGATTGGAGAGTTGAAAGATCTAGAAATATTGGACCTTTCTGCAAATAGATTTTCTGGTTGGATTCCAAAATCATTAGGGAATATAGACTCACTGCATAGATTAAATTTATCCAGGAATCAGTTCACAGGAAACTTGCCTGATTCAATGGTAAACTGCACTAAGCTTTTGGCTCTTGACATTAGCAGCAATCAGTTATCTGGCCATCTTCCTCCATGGATTTTTAGGATGGGTTTACAAAGTATCTCTCTTTCTGGGAACAGATTTGGTAAGGGCAATCCTTCACTCAGGTCCACACCTGCATCTTATCATGGTCTAGAGGTTTTGGATTTGTCATCCAATGCATTTTTTGGTGAAATTCCATCTGGCATTGGGGGTCTTAGTAGCCTGCAGGTCTTAAATATGTCCACCAACAATATCTCTGGTTCTATTCCTGTGGGCATAGGAGAACTTAAATCTTTATACATTGTTGACTTGAGTGACAACAAGCTTAATGGAAGCATCCCATCTGAAATAGAAGGTGCAATTTCACTCAGTGAGCTGAGGCTACAAAAGAACTTCCTAAGTGGGAGAATTCCATCCCAAATTGAAAAGTGTTCATCTCTAACATCTTTGATTGTTTCTCACAACAAGCTTAGTGGTTCAATCCCTGCAGCCATTGCAAACCTAACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAGTCTACCCAAGGAACTGACAAATCTTTCCCATCTTTCATCATTTAATGTATCTTACAACCACCTTGAAGGTGAGCTACCAGTGGGTGGCTTCTTCAATACTATATCCTCATCATCTGTCTCTGGTAACCCATTGTTGTGTGGTTCTGTTGTCAACCAATCTTGCCCATCTGTTCATCCAAAGCCTATTGTCTTAAATCCCAATTCTTCAGGTTCCAACTCCAGCATTTCCTCACAAAATCATCGACACAAGATCATACTCAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCTATTACTGTCCTAAATATGCATGTGCGTTCATCCATGGCGCCTGCTGCTGCTCCATTTGCATTCTCTGGTGGTGAGGACTACAGCAATTCGCCGGCGAATGATCCAAACTATGGCAAGCTTGTCATGTTTGATGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTTCTTAATAAAGACAGTGAAATAGGACGTGGTGGATTCGGAGTTGTTTATCGCACTTTCCTTCGAGATGGCCATTCAGTTGCAATCAAGAAGCTTACAGTCTCTAGTTTGATCAAGTCCCAAGAAGACTTTGAGAGGGAAGTGAGAAAGCTTGGAAAGATCAGGCACCAAAATCTTGTGGCACTTGAAGGTTATTATTGGACTTCATCCTTGCAGCTTCTCATTTATGAGTACCTATCCAAAGGGAGTTTGCATAAGCTTCTACATGATGAACATAATAGCCAAAATGTGTTCTCTTGGAGACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCTCATTTGCATCAAATGAACATAATCCACTACAATCTTAAATCAACCAATGTTCTGATTGATTGTTCTGATGAGCCAAAAATAGGAGATTTTGGCTTGGTGAAACTATTGCCAATGCTAGACCATTGTGTTTTAAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCACCTGAATTTGCGTGCCGCACGGTTAAGATAACTGAGAAATGTGATGTGTATGGTTTTGGAATCCTGGTTCTTGAAGTGGTGACAGGAAAAAGACCAGTGGAATACATGGAGGATGATGTGGTAGTTCTGTGTGACATGGTGAGGGGTGCATTAGAGGAAGGAAAGGTGGAGCAATGTGTTGATGGGAGGCTACTTGGAAATTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTAATTTGTGCATCACAAGTGCCATCAAACCGTCCTGATATGGCTGAAGTGATCAACATATTAGAGTTAATCCAGTGTCCTTCAGAAGGGCAAGAGGAATTAGAATGA 2898 0.4182 MMQFSICLLFLILFSPVLSVDPGFNDDVLGLIVFKAGLQDPKHRLSSWNEDDNSPCNWEGVKCDPSTNRVSALVLDGFSLSGHVDRGLLRLQFLQILSLSGNNFTGPINPDLPRLWSLQVVDLSDNNLSGTIPEGFFQQCGSLRAVSFAKNHLTGKIPDSLSYCSTLTTVNFSSNKLYGELPSGLWYLRGLQSLDLSNNLLEGEIPEGIQNLYDMRELSLQKNRFTGKLPGDIGGCILLKSLDLSDNFLSGELPHSMQRLTSCTSLSLQGNSFTGGIPDWIGELKDLEILDLSANRFSGWIPKSLGNIDSLHRLNLSRNQFTGNLPDSMVNCTKLLALDISSNQLSGHLPPWIFRMGLQSISLSGNRFGKGNPSLRSTPASYHGLEVLDLSSNAFFGEIPSGIGGLSSLQVLNMSTNNISGSIPVGIGELKSLYIVDLSDNKLNGSIPSEIEGAISLSELRLQKNFLSGRIPSQIEKCSSLTSLIVSHNKLSGSIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLSSFNVSYNHLEGELPVGGFFNTISSSSVSGNPLLCGSVVNQSCPSVHPKPIVLNPNSSGSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAITVLNMHVRSSMAPAAAPFAFSGGEDYSNSPANDPNYGKLVMFDGDADFADGAHNLLNKDSEIGRGGFGVVYRTFLRDGHSVAIKKLTVSSLIKSQEDFEREVRKLGKIRHQNLVALEGYYWTSSLQLLIYEYLSKGSLHKLLHDEHNSQNVFSWRQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSDEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVINILELIQCPSEGQEELE. 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01273 965 ProSiteProfiles Protein kinase domain profile. 681 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01273 965 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515
Seca2g01273 965 Pfam Leucine Rich Repeat 239 259 IPR001611 GO:0005515
Seca2g01273 965 Gene3D Ribonuclease Inhibitor 182 280 IPR032675 -
Seca2g01273 965 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 757 - -
Seca2g01273 965 Pfam Leucine rich repeat 264 321 IPR001611 GO:0005515
Seca2g01273 965 Pfam Leucine rich repeat 456 515 IPR001611 GO:0005515
Seca2g01273 965 Pfam Leucine rich repeat 384 443 IPR001611 GO:0005515
Seca2g01273 965 SUPERFAMILY Protein kinase-like (PK-like) 683 955 IPR011009 -
Seca2g01273 965 SUPERFAMILY L domain-like 42 373 - -
Seca2g01273 965 Gene3D Transferase(Phosphotransferase) domain 1 758 958 - -
Seca2g01273 965 SMART LRR_sd22_2 430 453 - -
Seca2g01273 965 SMART LRR_sd22_2 502 528 - -
Seca2g01273 965 SMART LRR_sd22_2 284 310 - -
Seca2g01273 965 SMART LRR_sd22_2 188 211 - -
Seca2g01273 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 304 576 - -
Seca2g01273 965 Gene3D Phosphorylase Kinase; domain 1 672 757 - -
Seca2g01273 965 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 325 954 - -
Seca2g01273 965 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 758 960 - -
Seca2g01273 965 SMART LRR_typ_2 212 236 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 502 525 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 115 139 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 308 332 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 284 307 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 188 211 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 526 550 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 333 356 IPR003591 -
Seca2g01273 965 SMART LRR_typ_2 406 430 IPR003591 -
Seca2g01273 965 CDD STKc_IRAK 687 954 - -
Seca2g01273 965 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Seca2g01273 965 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Seca2g01273 965 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Seca2g01273 965 SUPERFAMILY L domain-like 285 557 - -
Seca2g01273 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 25 303 - -
Seca2g01273 965 Gene3D Ribonuclease Inhibitor 286 575 IPR032675 -
Seca2g01273 965 Pfam Protein kinase domain 682 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01273 Seca-Chr2 20598693 20601789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01273 1 962 Receptor kinase-like Gene Family AT5G01890 62.436 0.0 1155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Seca2g01273 Pkinase 8.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01273 - - gmx:100790365 1667.13