Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01259 ATGCCTTGCCACATATTTCCGACGAAACGTCCTACATTAGGGATGTTTGAATCAAAATTTTATGCTTTCAAGGGCAAAATCGACATAGATCCAAATTTTTGGTCAAAATGGCGTTCCTACTTACCCTCCGAGGTCTATTTTACAGATCCTGTTGGGAATTCTTTCCCAATAGGTATTAGTTCAAAAGGAGATAGTGCTGTCTTTAAAAGAAATGTGAACACAATGGTTAGATTTTATGGGCTGAATAGAAAGCATAGTGTTCTATTTTGCTACAAGGGTGGGAACCAATTCTATATTTTGGTGGGAAATCGATACGGGGTTGAAATTAAATACCCCCAAAAACCAAGTGATGTAGTGGAAATATCTTCAAATGATAGTGAAAGTGACCATGAAGGTCATGTCGATTCTGTTGATGATGGCAGTGATCCTGAGGATTTCCCTTTCTGGACTATGACAATGTCCAAGTCATCTGCTTCTGGGAGGAATGTTTTGCCTATTCCTGTAAAATTTGTCAGAGAGGGGCTTCTGCAAAATCAGCGGGTTTTGACTTTAAGACTTGACAACGGTGATCAGATTCTTTGCAAAATATTAAAAGGTTCTAGGAGGCGGAATGAACGATATCTCAGTAGAGGTTGGTACAAGTTTTGCCGCGACCAAAAATTCAAGGAGGGAGATATGCTGTTGTTTTATTCAAAGGGCGATCCATACAATTTGTGTATTATGATAAAGCGCTCATAA 738 0.3902 MPCHIFPTKRPTLGMFESKFYAFKGKIDIDPNFWSKWRSYLPSEVYFTDPVGNSFPIGISSKGDSAVFKRNVNTMVRFYGLNRKHSVLFCYKGGNQFYILVGNRYGVEIKYPQKPSDVVEISSNDSESDHEGHVDSVDDGSDPEDFPFWTMTMSKSSASGRNVLPIPVKFVREGLLQNQRVLTLRLDNGDQILCKILKGSRRRNERYLSRGWYKFCRDQKFKEGDMLLFYSKGDPYNLCIMIKRS. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01259 245 Pfam B3 DNA binding domain 151 243 IPR003340 GO:0003677
Seca2g01259 245 SUPERFAMILY DNA-binding pseudobarrel domain 145 240 IPR015300 -
Seca2g01259 245 MobiDBLite consensus disorder prediction 123 140 - -
Seca2g01259 245 Gene3D - 136 244 IPR015300 -
Seca2g01259 245 Gene3D - 15 104 IPR015300 -
Seca2g01259 245 MobiDBLite consensus disorder prediction 120 141 - -
Seca2g01259 245 SUPERFAMILY DNA-binding pseudobarrel domain 25 101 IPR015300 -
Seca2g01259 245 ProSiteProfiles B3 DNA-binding domain profile. 149 245 IPR003340 GO:0003677
Seca2g01259 245 CDD B3_DNA 152 244 IPR003340 GO:0003677
Seca2g01259 245 PANTHER B3 DOMAIN-CONTAINING 28 130 - -
Seca2g01259 245 SMART B3_2 150 245 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01259 Seca-Chr2 20362779 20373402 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g01259 B3 3.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01259 - K03539 lja:Lj0g3v0086279.1 78.5666