Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01250 ATGCAGGTAAAGGTTGGAATTGAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAAGCAATTCACAGTTCACAAAAGGGGGAAAATGGCTTGTTTGGAAGTTTGAGGGAAACCGCTCTCTTGCTGATTACATGGCAGATAGGAACTTCCCTTCAAACATAGAGTCTGTCATGTTTGGAAGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTAATCATCAAGCAGATAATGCGGCAGATCATTACATCTCTTAAGAAAATTCACAACACAGGCATTGTTCACAGGGATGTAAAGCCTGCTAACTTGGTGGTTACCAAATTGGGGCAGATCAAGCTCATTGATTTTGGTTCAGCAACAGACCTGAGGATTGGAAAGAATTATGCTCCCAATTGTAACCCTTTGGATCGTGACTACTGTCCACCTGAACTGTATGTGCTGCCAGAAGAAACATCAAGTCTTCCACCAGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCTTGCAAATGGCTATACCAACCTTAAGGTCTCCAGCTGCTTTGAAGAATTTCAATTTGGAATTAAGAACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAGGTCTGATTTCCAAATCCTTGATAGTGACTCAGGTAGAGGGTGGGACTTAGCAACGAAGCTTATTTCCAAAAGAGGTTCCCAAAGAAGAGGACGTTTATCTGCTTCTGCTGCTTTGAGGCATCCTTATTTCCTTCTAGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAATTAAGCTTAAGCACAAATTGA 936 0.4177 MQVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKSNSQFTKGGKWLVWKFEGNRSLADYMADRNFPSNIESVMFGSVLQGVDSSKRNALIIKQIMRQIITSLKKIHNTGIVHRDVKPANLVVTKLGQIKLIDFGSATDLRIGKNYAPNCNPLDRDYCPPELYVLPEETSSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLELRTYGYDLNKWRDSTRMRSDFQILDSDSGRGWDLATKLISKRGSQRRGRLSASAALRHPYFLLGGDQAAAVLSKLSLSTN. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01250 311 SMART serkin_6 48 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01250 311 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 2 310 - -
Seca2g01250 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca2g01250 311 Pfam Protein kinase domain 99 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01250 311 ProSiteProfiles Protein kinase domain profile. 1 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01250 311 SUPERFAMILY Protein kinase-like (PK-like) 50 293 IPR011009 -
Seca2g01250 311 Gene3D Transferase(Phosphotransferase) domain 1 90 294 - -
Seca2g01250 311 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01250 Seca-Chr2 20240300 20244194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01250 106 292 AGC Kinase Gene Family AT3G10540 28.497 1.54e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Seca2g01250 Pkinase 4.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01250 - - gmx:100795624 557.37