LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g01244	ATGATGAGGAACATGAATCAATACTATGTTTGTGTTCCATTATTGTTTATGTGTTTGGTATTAGCTGTTGAACTTGTACTAGCAGCGGATTTTAAGCCTACAGATAAAATCCTGCTGAATTGTGGAGGTCCTCCAACTAGTTCTGATACTGATGGCCGTGAATGGACCACTCATATTGGTTCCAAGTTTGGTTCCTCTGCTGGGAATTCAAATTCCAACACATCAACAGCAGCAACACAAGACCCTGCCGTCCCTCAGGTGCCTTACATGACGGCTCGCGTGTTTCGCAAGCCTTATACTTACAGTTTTCCGGTGGCATCTGGTTGGAAATTCCTCAGGCTGTACTTTTATTCAGCTTCTTATAATGGCCTCAATGCATCGGATGCGCTTTTCGCTGTGTCAGCGCAATCCTACACCTTGCTTAGGAACTTCAGTGTTTCTCAGACTGCCTTGGCTTTGAATTATGCCTACATTGTGAAGGAATACTCCATTAATGTTGAAGGGGGAACCTTGAATGTGACTTTCACTCCATCTACCAATGCCTCTAATGCCTATGCATTTGTTAATGGGATTGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGATTGTGGGTTCAAATACTCCTTTCACCATTGACAACAGCACTGCACTTGAGAATCTTTATAGGTTAAATGTGGGTGGGAATGATATCTCGCCTTCCCATGATACCGGCATGTTTAGGTCATGGTCTGATGATATGCCTTACCTCTTTGGAGCTGCATTTGGAGTCACTGAGCCTGCTGATCCAGAAGTGAAGATTGAGTATCCTCCAAGCACACCAACTTACATTGCTCCTACTGATGTCTACACTACAGCTAGATCAATGGGCCCAAATGCTGATATCAACATGAATTACAACTTGACATGGATTTTCTCCATTGATTCTGGGTTTTCCTATCTTGTGAGACTCCATTTTTGTGAGGGCACTACAAATGTAACCAAGATTAATCAAAGAGTGTTTAATATATTCCTCAATAATCAAACTGCTGCGGATGGGGCTGATGTTATAGCCTGGGCAGGGGAATTTAGCCTTTCACATGCAAATGGGGTTCCAGTGCATAAAGATTATGTTGTATTTGTTCCTAATGGGGAACCACGGCAGGACTTGTGGCTTGCACTGCATCCAAATCCAACTTCAAAGCCCCAGCTTTATGATGCAATCGTGAATGGAGTGGAGATATTCAAAATCAGTGATAGTACTACAGGTAATCTGGCAGGGACAAATCCTATTCCTCCTCCAGTGCAAGACATAATTGATCCTTCATTGGCTAGGACATCTAGTCATGGTAAATCAAAGAATCAGGCAGGAATAATCGCAGGATGTGTTGGTGGAGGAGTTGTTTTATTGCTTGTGATTGGGCTATTTGCTTTTGCTGCATCCCGTCGCCGTAGGCATGGAAAAGATTCTAGTGCAAGTGAAGGGCCATCTGGCTGGCTTCCACTTTCTCTTTATGGTAATTCACACTCTGCAGCTTCTGCCAAGACCAACACAACAGGAAGTTATGCATCCTCCCTCCCATCAAACCTTTGTCGTCATTTCTCATTTGCTGAAATCAAGGCTGCCACAAACAACTTCGATGAGGCTTTACTCCTTGGTGTGGGAGGATTTGGTAAGGTTTACAAAGGAGAAGTTGATGGTGGATCAACCAAAGTTGCAATCAAACGTGGGAATCCACTCTCTGAGCAAGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCACTGATTGGTTATTGTGAAGAAAACACTGAAATGATCCTTGTCTATGATTACATGGCCTATGGAACACTCAGGGAGCATCTATACAAAACCCAGAAACCTCCACTGCCTTGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATCTACACACTGGTGCTAAACACACTATCATCCACCGTGATGTGAAGACAACAAACATTTTACTAGATGAGAAGTGGGTGGCTAAGGTTTCTGATTTTGGATTGTCTAAAACAGGTCCTACATTGGATAACACACATGTAAGTACTGTAGTAAAGGGTAGTTTTGGATACTTGGATCCAGAATACTTCAGGAGGCAGCAACTGACTGATAAATCTGATGTGTACTCATTTGGTGTTGTTCTATTTGAGATATTGTGTGCTCGCCCAGCTTTGAACCCAACACTTCCTAAGGAGCAAGTGAGTCTAGCTGAATGGGCAGCTCATTGCTACAAGAAAGGCATTCTTGACCAAATCATTGATCCTTATCTGAAGGGCAAGATAGCTCCTGAATGCTTTAAGAAGTTTGCTGAGACTGCAATGAAGTGTGTGGCTGACCAAGGCATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGTGCAGAGGAAAGTGGCAATGGATTTGGTGGAATACAGAGTGAAGATGAGCCATTATTTAAAGGAAAGAAGGATTCAGATGGATTGGCTGTTTATGATGGTAATGTGACTGACTCCAAAAGCAGTGGCATGTCTATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACACCAAGTGCTGTGTTCTCCCAAATCATGAATCCAAAAGGGCGTTAA	2703	0.4332	MMRNMNQYYVCVPLLFMCLVLAVELVLAADFKPTDKILLNCGGPPTSSDTDGREWTTHIGSKFGSSAGNSNSNTSTAATQDPAVPQVPYMTARVFRKPYTYSFPVASGWKFLRLYFYSASYNGLNASDALFAVSAQSYTLLRNFSVSQTALALNYAYIVKEYSINVEGGTLNVTFTPSTNASNAYAFVNGIEVVSMPDIYTSTDGTTMIVGSNTPFTIDNSTALENLYRLNVGGNDISPSHDTGMFRSWSDDMPYLFGAAFGVTEPADPEVKIEYPPSTPTYIAPTDVYTTARSMGPNADINMNYNLTWIFSIDSGFSYLVRLHFCEGTTNVTKINQRVFNIFLNNQTAADGADVIAWAGEFSLSHANGVPVHKDYVVFVPNGEPRQDLWLALHPNPTSKPQLYDAIVNGVEIFKISDSTTGNLAGTNPIPPPVQDIIDPSLARTSSHGKSKNQAGIIAGCVGGGVVLLLVIGLFAFAASRRRRHGKDSSASEGPSGWLPLSLYGNSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIKAATNNFDEALLLGVGGFGKVYKGEVDGGSTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCYKKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGGIQSEDEPLFKGKKDSDGLAVYDGNVTDSKSSGMSMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR.	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g01244	900	Gene3D	-	37	197	-	-
	Seca2g01244	900	Gene3D	-	223	417	-	-
	Seca2g01244	900	Gene3D	Phosphorylase Kinase; domain 1	506	621	-	-
	Seca2g01244	900	ProSiteProfiles	Protein kinase domain profile.	545	819	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g01244	900	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	666	678	IPR008271	GO:0004672\|GO:0006468
	Seca2g01244	900	Gene3D	Transferase(Phosphotransferase) domain 1	622	833	-	-
	Seca2g01244	900	Pfam	Malectin-like domain	39	416	IPR024788	-
	Seca2g01244	900	MobiDBLite	consensus disorder prediction	829	900	-	-
	Seca2g01244	900	FunFam	FERONIA receptor-like kinase	222	417	-	-
	Seca2g01244	900	FunFam	FERONIA receptor-like kinase	36	197	-	-
	Seca2g01244	900	MobiDBLite	consensus disorder prediction	859	893	-	-
	Seca2g01244	900	FunFam	Receptor-like protein kinase FERONIA	517	621	-	-
	Seca2g01244	900	PANTHER	OS03G0124300 PROTEIN-RELATED	11	488	IPR046957	GO:0004672
	Seca2g01244	900	SUPERFAMILY	Protein kinase-like (PK-like)	519	818	IPR011009	-
	Seca2g01244	900	CDD	STKc_IRAK	551	817	-	-
	Seca2g01244	900	Pfam	Protein tyrosine and serine/threonine kinase	551	813	IPR001245	GO:0004672\|GO:0006468
	Seca2g01244	900	FunFam	Receptor-like protein kinase FERONIA	622	832	-	-
	Seca2g01244	900	SMART	serkin_6	545	819	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g01244	900	ProSitePatterns	Protein kinases ATP-binding region signature.	551	574	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g01244	Seca-Chr2	20183074	20186747	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g01244	20	900	Receptor kinase-like Gene Family	AT3G51550	74.859	0.0	1338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca2g01244		Malectin_like	4.8e-38	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g01244	-		-	gmx:100499644	1530.38