Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01235 ATGGTTACAGTTTTTTCATTTCATCAGTGTCTAACATTGCTAGGGAAACAAGTGGAATTATTAAAATCAGACAACACCTTGATGATGCCACAGTCCTACTTTGCCACTCTACCAATTTTCCTTCTCTTGGTTGTGTTTCATAAAACTATAGCTGATCTACATTCAGAAAAGCAAGCCCTTCTTGATTTTGCTGCTGCAGTTCATCATGGTAACAAAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCTTGGGTGGGAGTTACATGTAGTTCTGATGGCTCTCATGTGGTTTCTGTGAGGCTTCCAGGTGTTGGATTGAGAGGTTCTCTCCCAGAAAAAACAATTGGTAAACTAAATGGTCTCATCAGTCTCAGTCTTAGGTCTAATAGCTTGAATGGGAATCTTCCACCTGACATATTTTCCCTTCCTTCTCTACGCTTTATATATCTACAACACAACAATTTTTCAGGTGATATTCCTGATTTTCTGCCACCACAGCTTATCTTTCTTGATTTATCTTACAACTCTTTCACAGGACAAATTCCAGGGTTAATCCAAAACTTGACATATCTAATAGGATTGAATCTCCAAAATAACTCTTTGAGAGGACCTATTCCTGATGTTAACCTTCCTAGCCTTAAGAATTTGGATTTGAGCTTCAATTATCTGAATGGTTCAGTTCCTTCAGGGCTTCATAAGTTTCCTGCCTCCTCATTTAAAGGGAATTTTATGTTATGTGGAGAACCTTTGGAACAATGTTCTTCATTTTCTCCTACTACCACTTTGTCTCCACTAATAGTATCCCAGAAACCAAGTGATCTCTCAAACAAGAAGCTGAGTACAGGGGCAAAAGTTGCTATTGCTTTGGGGGCTTTCACACTGCTGTTTCTTCCAGCTGTTGTAGTGGTGTTTTGCTGTTTCAAGAAAAGGGTAGGTGAACAGAATGTGGCACCTAAAGAGAAGGGTGAGAAGCTTAGGGAGGGCTTTGGGAGTGGGGTGCAAGAACCTGAGAGAAACAAGCTGATATTTTTTGAAGGTTGTTCTCATAATTTTGATCTTGAGGATTTGTTAAGAGCCTCAGCTGAAGTGCTTGGGAAGGGAAGTTGTGGAACAACATATAAAGCTATCTTGGAGGAAGGGACAATAGTGGTAGTGAAGAGGTTAAAAGAAGTGACCATAGGGAAAAAAGAATTTGAACAGCAAATGGAGATTGTCCAAAGGCTTGATCGCCACCCAAATGTGGTTACCCTTCGTGCTTACTATTATTCCAAGGATGAAAAACTCATGGTTTATGACTACTTCACATCTGGCAGCTTTTCCAAGTTATTGCATGGAACAAGGGAAACTGGACGAACTCCACTAGATTGGGATACTAGATTGAAGATCATGGCAGGAGCTGCTAGGGGCATTGCCCATATCCACTCAGCCAATGGAAGGAAATTTGTCCATGGCAATATAAAATCATCTAATGTGCTTCTCTCAATAGATCTTCAAGGCTGGATATCAGATTTTGGCTTAACTCCTCTAACAAGTTTCTCTGTCTCCACCAGAAGTCCAGGCTACCGGGCACCTGAGGTTATTGAAACCAGAAAATCCACCCAAAAATCTGATGTATACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAAACACCAATTCAGTATTCAGGGCATGATGATGTGGTTGACCTTCCAAAGTGGGTTCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGATATCCAAACATTGAAGAAGAACTAGTGCAGATGCTGCAACTAGCAATGGCATGTGTAGCAATGACACCTGACACTAGACCTTCCATGGAAGAAGTTGTAAGGATAATTGAAGACATAGCATCCATTTCTTAG 1902 0.4075 MVTVFSFHQCLTLLGKQVELLKSDNTLMMPQSYFATLPIFLLLVVFHKTIADLHSEKQALLDFAAAVHHGNKVNWNSSTSICTSWVGVTCSSDGSHVVSVRLPGVGLRGSLPEKTIGKLNGLISLSLRSNSLNGNLPPDIFSLPSLRFIYLQHNNFSGDIPDFLPPQLIFLDLSYNSFTGQIPGLIQNLTYLIGLNLQNNSLRGPIPDVNLPSLKNLDLSFNYLNGSVPSGLHKFPASSFKGNFMLCGEPLEQCSSFSPTTTLSPLIVSQKPSDLSNKKLSTGAKVAIALGAFTLLFLPAVVVVFCCFKKRVGEQNVAPKEKGEKLREGFGSGVQEPERNKLIFFEGCSHNFDLEDLLRASAEVLGKGSCGTTYKAILEEGTIVVVKRLKEVTIGKKEFEQQMEIVQRLDRHPNVVTLRAYYYSKDEKLMVYDYFTSGSFSKLLHGTRETGRTPLDWDTRLKIMAGAARGIAHIHSANGRKFVHGNIKSSNVLLSIDLQGWISDFGLTPLTSFSVSTRSPGYRAPEVIETRKSTQKSDVYSFGVLLLEMLTGKTPIQYSGHDDVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLAMACVAMTPDTRPSMEEVVRIIEDIASIS. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01235 633 FunFam pollen receptor-like kinase 1 328 434 - -
Seca2g01235 633 Pfam Protein kinase domain 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01235 633 Pfam Leucine rich repeat N-terminal domain 55 91 IPR013210 -
Seca2g01235 633 Gene3D Ribonuclease Inhibitor 167 256 IPR032675 -
Seca2g01235 633 SUPERFAMILY L domain-like 68 235 - -
Seca2g01235 633 Gene3D Phosphorylase Kinase; domain 1 328 434 - -
Seca2g01235 633 Gene3D Ribonuclease Inhibitor 54 166 IPR032675 -
Seca2g01235 633 ProSiteProfiles Protein kinase domain profile. 359 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01235 633 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 435 633 - -
Seca2g01235 633 CDD STKc_IRAK 365 629 - -
Seca2g01235 633 FunFam Leucine-rich repeat receptor-like protein kinase 55 165 - -
Seca2g01235 633 FunFam Leucine-rich repeat receptor-like protein kinase 166 254 - -
Seca2g01235 633 Gene3D Transferase(Phosphotransferase) domain 1 436 632 - -
Seca2g01235 633 PANTHER OS05G0588300 PROTEIN 37 629 - -
Seca2g01235 633 SUPERFAMILY Protein kinase-like (PK-like) 363 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01235 Seca-Chr2 20078313 20081197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01235 39 629 Receptor kinase-like Gene Family AT5G58300 61.167 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca2g01235 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01235 - - gmx:100796675 1006.13