Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01224 ATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTGTTTTATCATCGTCATAGCAGCCTCACAACGAACAGATCCTTCTGAAGTGAAAGCGCTGATGGACATTAGAAAGAGTTTGATTGATCCCATGGACCACCTGAAGAACTGGAAAAAGGGTGATCCATGTGCAGCAAATTGGACCGGGGTTTTGTGTTTTGATAGGAAGGAGGCTGATGGTTACTTCCATATCCGTGAGCTCTACCTAATGACTCGGAATCTCTCGGGAAGTCTAGCACCTCAGCTTGGTCAGCTCTCATATCTTGAGATACTGAATTTCATGTGGAACAATCTGACAGGCACAATACCGAAGGAGATTGGAAATATTACATCATTGAAACTCTTGCTTCTGAGTGGGAATAAATTATCTGGTAGTTTACCAGATGAGCTTGGCAACCTTTCAAAATTGAATAGATTCCAAGTTGATGAAAACCAATTATCAGGTCCTGTACCAGAATCATTTGCCAACTTGATCAATGTTAAACACCTCCACATGAACAACAACTCATTCAGTGGTCAAATTCCATCCCAACTATCAAACCTATCCATTCTTCTGCATTTGCTTCTGGATAACAATAACTTATCTGGCTCTCTTCCACCAGAATTCTCCATGTTACAAAGTTTGGCAATACTCCAACTTGATAACAATAATTTCAGCGGGAATGGAATTCCTTCTACCTATGCAAACTTATCCAACTTAGTAAAACTGAGTCTAAGAAACTGCAGTCTGCAAGGAGCTGTTCCTGATTTCAGTCCAATACCCAAACTAAGCTATTTAGATCTTAGCTGGAATCAGTTTACTGGACCCATACCATCAAAGAAACTTGCAGACAATATGACAACCGTTGATCTGTCCAATAATCATCTCAATGGATCTATTCCTCGAAGCTTTTATCCTCATCTCCAAAAATTGGCACTTGAGAACAATTTACTGTCTGGCTCCGTCCCTGCTAGCATATGGCAGAACTTGTCCTTCAGTAGGAGTGCTAAACTTACAATTGATCTTCATAACAACCTACTTTCGGACGTTTTGGGAAATTTGAACCCCCCAGCAAATGTTACCTTGAGGCTTTCTGGCAATCCTATTTGCAAGAATTCTAACACACAAAGTATTGGTCAATATTGTGGACTTGAAGGAGATGAAGTGGACAAAGACTCAACAAATTCAAAAATTGTTTGTAAAGTTCAATCTTGTCCGGTGGATAATTTCTATGAATATTCCCCCTCTTCTCCAATTCCTTGTTTTTGTGCAGCACCTCTGAGAATTGGATACAGACTAAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTTTAGAACTAGTTTTGAATCATACATAACGGAGTACTTAGACTTACACCTTTATCAGTTGTCAATAGATTCATATGATTGGGAAGAGGGACCTCGTCTTAGAATGTACCTAAAAATTTTTCCCTCATACAATGATTCCCAATCCAATACATTCAATGCAAGTGAGGTTCATCGAATTAAAGGCATATTTACATCATGGCACTTTCCTCGCACTGATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTGGGACCTTATGCAAATTCTATAGTAAATATTGATTCAGAGAAGAGAAAAACAAGTACAGGCATAATAGTTGCTATCATAATAGCAGCTGTTGCCTGTGTTTTTGCAATAGCTGCAACAACCATTCTCCTAATTTCTAGAAGAGATGTGAAATACCGGCACTTGATTTCCAGGAAACGTATGTCCTCTAATATACCTATCAAAATAGATGGCTTGAAAGCATTTACTTTTAAAGAGTTGGTTCATGCTACCAACAAATTTGATATCTCAACTAAAGTGGGCCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATGTGATGAAACATTTGTTGCCATTAAGCGAGCAGAAGAAAATTCATTACAGGGCCAAAAAGAGTTTTTGACTGAGATTGAGCTTTTATCAAGGTTACACCATCGAAATCTTGTCTCACTGATTGGCTACTGTAATGAAGAAGGGGAGCAGATGCTGGTTTATGAGTTCATGCCCAATGGCACCCTAAGGGATTGGATTTCTGGTACGAAATTGTTGGAATTTTCTACATTAAAATTAGCAATGTTATGTAAAAGAACAAAAACCAAGGAAGGCCTAAGTTTTGGTATGAGAATGCGGATTGCAATGGGTGCAGCGAAAGGCATACTATATCTGCATACAGAGGCTAACCCTCCTATATTCCACCGAGACATTAAAGCCAGTAACATACTTCTGGACTCCAAGTTTACAGCTAAGGTGGCTGATTTTGGATTGTCACGACTTGTACCATACTTAGATGAAGAAGGAAGTACTCCTAAATATGTGTCAACAGTTGTGAAGGGAACACCAGGTTACCTGGACCCAGAATATATGATGACTCATAAGTTGACTGATAAAAGTGATGTATATAGCTTAGGAATTGTGTTTCTGGAGCTTTTAACAGGCATGCAACCAATATCACGTGGAAAAAACATTGTCCGCGAGGTTAATATGGCTTATCAGTCTGGCATAATATACTCCATTATAGACAACAGAATGGGTGTGTATCCTTCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGCAAGATGTGGTAAGGGAACTAGAAGATATTATTGCAATGTTACCTGAAACTGAAACTAGTTTCTTAGATGTTACCTTAGATCATTCTGGTAACATGGCACCCTCATCATCATCACCATCAACAACAACTTCAGGATCCAATGTGACTAGGAAGGACCAGCACATGTCTTCATATGTTTCAGGAAGTGATCTTGTTAGTGATGTCATTCCCACCATTGTTCCTCGCTAA 2934 0.393 MPALRIHGYALAVSFCFIIVIAASQRTDPSEVKALMDIRKSLIDPMDHLKNWKKGDPCAANWTGVLCFDRKEADGYFHIRELYLMTRNLSGSLAPQLGQLSYLEILNFMWNNLTGTIPKEIGNITSLKLLLLSGNKLSGSLPDELGNLSKLNRFQVDENQLSGPVPESFANLINVKHLHMNNNSFSGQIPSQLSNLSILLHLLLDNNNLSGSLPPEFSMLQSLAILQLDNNNFSGNGIPSTYANLSNLVKLSLRNCSLQGAVPDFSPIPKLSYLDLSWNQFTGPIPSKKLADNMTTVDLSNNHLNGSIPRSFYPHLQKLALENNLLSGSVPASIWQNLSFSRSAKLTIDLHNNLLSDVLGNLNPPANVTLRLSGNPICKNSNTQSIGQYCGLEGDEVDKDSTNSKIVCKVQSCPVDNFYEYSPSSPIPCFCAAPLRIGYRLKSPSFSYFPPFRTSFESYITEYLDLHLYQLSIDSYDWEEGPRLRMYLKIFPSYNDSQSNTFNASEVHRIKGIFTSWHFPRTDFFGPYELLNFTLLGPYANSIVNIDSEKRKTSTGIIVAIIIAAVACVFAIAATTILLISRRDVKYRHLISRKRMSSNIPIKIDGLKAFTFKELVHATNKFDISTKVGQGGYGNVYKGILCDETFVAIKRAEENSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEGEQMLVYEFMPNGTLRDWISGTKLLEFSTLKLAMLCKRTKTKEGLSFGMRMRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPYLDEEGSTPKYVSTVVKGTPGYLDPEYMMTHKLTDKSDVYSLGIVFLELLTGMQPISRGKNIVREVNMAYQSGIIYSIIDNRMGVYPSDCLDKFLTLALSCCQDNPEERPSMQDVVRELEDIIAMLPETETSFLDVTLDHSGNMAPSSSSPSTTTSGSNVTRKDQHMSSYVSGSDLVSDVIPTIVPR. 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01224 977 Gene3D Phosphorylase Kinase; domain 1 593 697 - -
Seca2g01224 977 SMART serkin_6 622 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01224 977 Gene3D Ribonuclease Inhibitor 28 288 IPR032675 -
Seca2g01224 977 PANTHER RECEPTOR-LIKE PROTEIN 55 43 912 - -
Seca2g01224 977 CDD STKc_IRAK 628 912 - -
Seca2g01224 977 SUPERFAMILY L domain-like 43 383 - -
Seca2g01224 977 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Seca2g01224 977 Pfam Protein tyrosine and serine/threonine kinase 624 909 IPR001245 GO:0004672|GO:0006468
Seca2g01224 977 MobiDBLite consensus disorder prediction 929 961 - -
Seca2g01224 977 ProSiteProfiles Protein kinase domain profile. 622 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01224 977 Gene3D Ribonuclease Inhibitor 289 415 IPR032675 -
Seca2g01224 977 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Seca2g01224 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Seca2g01224 977 SUPERFAMILY Protein kinase-like (PK-like) 607 945 IPR011009 -
Seca2g01224 977 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 698 924 - -
Seca2g01224 977 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Seca2g01224 977 Gene3D Transferase(Phosphotransferase) domain 1 698 924 - -
Seca2g01224 977 FunFam Leucine-rich repeat protein kinase family protein 586 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01224 Seca-Chr2 19869836 19881001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01224 5 921 Receptor kinase-like Gene Family AT5G01950 60.846 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca2g01224 PK_Tyr_Ser-Thr 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01224 - - gmx:100815005 1516.52