Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01212 ATGGATGAAAATTCTGAGAATATCTCGTGTGTGTCATCTCAGTCTACTTCACAGGTTCATGGGGGCACTGATTCTGGCCAGGTTGCAGTGTGTTCTCTTTGCCAAAAGGCCCTATCTCCTGATAATGAGATGACAAGTGATCTTGCTACCAGTGGCATATGTGGTGATTGTAAATTTTTATTGCTTGAAGATTTTGGGAATCATATGGTTACCCCAAGCTCTCAAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCAGTTGAGAGCATTTTATCACAACAGCTCCCTCATATGGTTAATACTGTGAGACAAAACCAATCCATTGCATCTGCGGAGGATGATCAACTCTTAGATGATGACACCCCTACTAGGTCGTTGCAGTATGCTAGTACACATACTACCCCTAGTGGGTCTAGGCGATGGAGGCAGGTTCTCTCTGATACTGACAGTGATGGTTTTGATAATTGGAGTTCTCTTTATGGTGAAAATGAATCAAGTGCAAGTTTTAGAAGGTATAGGGTTCCCCATGGTGAGACTGATTCTTTTTCTTTTAGTGCTTATGGAGGTGACTCTGATATCTCAATGGATAGACATAGTTTTGCAGGCAATGGAATGTTTGATTTACCAGATGAGGGGTATGAGTTTGATAGTGACACTGACATAGATCCAATGCATGCTGGCCTCAGCCAATGGAACTCAGATGACATGGAAGACGAGGAGGAAGAAGAGGACGATGAGGAGGAGGAGGATGAGGATGAGGAAAATGAGGAGGAGGAAGAAAGGGGATGGGAAGTAGCTGACGCCGATGAAGCTGAAGCCACAGCTCGCCTTCGAATTCTTTTAACCTCAAGTCCAAGTGAGAGCAGGGGTGGCGTTAATTGGGAGCAAAGGTTTAATTCTACTGAACCTGAAGGAATATTTAGCCAGATAATCAGGGATACCTGGCAAGCTTTGGAGGATGCTGATTTACATCATGGAGCAAACTTTGGGGATTATCTTGATATTAGACCCTTTGAAGATCTGCTTGAGCATCTTGCTGAAAATGACATCTCAAGACGAGGAGCGCCTCCTGCTGCTGTGTCTTTTGTGAATAACCTGCCCCGAGTAGTCATTGGCAAGGAACATGAGAAGCATGGCGAACTAGTCTGTGCCATTTGCAAGGATGTCTTGTCCCCTGGCACTGAAGTAAATCAGCTTCCCTGTTCTCACCTTTATCACAACCGTTGCATTTTGCCATGGTTGAGTACACGAAACTCATGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAACTACATGTGACAGATGATAATTCCTCTGATGTTTCTGATGAAGCTGAAGTGGGTGAAGAGGATGGTACTACTCAAGGTGGAAGACAACAGAGAGGAGTTGTTAGCAATGGTTCTACCACTAATTCTTCCGCAACAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATGGTTCTTGTCCTGTGGTTAGGTAGCAACTCTCAGATTGAAGGGAGTAGACATCTGGGTGGTCGCTACTTATCCGGGCAAAATCAACATGTGGTTCATGCTTATGCCTCCCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1719 0.4456 MDENSENISCVSSQSTSQVHGGTDSGQVAVCSLCQKALSPDNEMTSDLATSGICGDCKFLLLEDFGNHMVTPSSQRRLRGRFRHNSSESVESILSQQLPHMVNTVRQNQSIASAEDDQLLDDDTPTRSLQYASTHTTPSGSRRWRQVLSDTDSDGFDNWSSLYGENESSASFRRYRVPHGETDSFSFSAYGGDSDISMDRHSFAGNGMFDLPDEGYEFDSDTDIDPMHAGLSQWNSDDMEDEEEEEDDEEEEDEDEENEEEEERGWEVADADEAEATARLRILLTSSPSESRGGVNWEQRFNSTEPEGIFSQIIRDTWQALEDADLHHGANFGDYLDIRPFEDLLEHLAENDISRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLSPGTEVNQLPCSHLYHNRCILPWLSTRNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQLHVTDDNSSDVSDEAEVGEEDGTTQGGRQQRGVVSNGSTTNSSATRGGRGRWFFLAAAPIVSLVGMVLVLWLGSNSQIEGSRHLGGRYLSGQNQHVVHAYASQNQRESRSRRWWCPF. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01212 572 SMART ring_2 386 426 IPR001841 -
Seca2g01212 572 MobiDBLite consensus disorder prediction 214 272 - -
Seca2g01212 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 433 IPR013083 -
Seca2g01212 572 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 239 431 - -
Seca2g01212 572 MobiDBLite consensus disorder prediction 437 464 - -
Seca2g01212 572 Coils Coil 236 264 - -
Seca2g01212 572 MobiDBLite consensus disorder prediction 236 269 - -
Seca2g01212 572 FunFam E3 ubiquitin-protein ligase RING1-like 347 433 - -
Seca2g01212 572 MobiDBLite consensus disorder prediction 124 143 - -
Seca2g01212 572 MobiDBLite consensus disorder prediction 437 500 - -
Seca2g01212 572 CDD RING-H2_PA-TM-RING 385 427 - -
Seca2g01212 572 MobiDBLite consensus disorder prediction 478 500 - -
Seca2g01212 572 SUPERFAMILY RING/U-box 369 433 - -
Seca2g01212 572 MobiDBLite consensus disorder prediction 113 143 - -
Seca2g01212 572 MobiDBLite consensus disorder prediction 1 23 - -
Seca2g01212 572 Pfam Ring finger domain 386 427 IPR001841 -
Seca2g01212 572 ProSiteProfiles Zinc finger RING-type profile. 386 427 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01212 Seca-Chr2 19606108 19609048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01212 29 572 C3H Transcription Factor Family AT5G01980 44.760 4.94e-125 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01212 - - gmx:100797923 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01212 2 19606108 19609048 Seca2g01212 2 19606108 19609048 ECH