Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01206 ATGGAGGACGTCATGAACTATGCTAAGGATGGGAGTGTTAAAGTACCTGTTGGGTACAGGTTTGATCCCACAGATGAGATTCTTGTTAATTTCTACCTCAAGAGGAAGGTCTATGCTCTGTCTCTTCCTGCTCAAGTCATCCAAGAATTTGATGTTTTCCAAACAGAGCCATGGAAACTCGCCGGAGGTAGGCAGCACCTTTTCACTTTTCCCTAG 216 0.4491 MEDVMNYAKDGSVKVPVGYRFDPTDEILVNFYLKRKVYALSLPAQVIQEFDVFQTEPWKLAGGRQHLFTFP. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01206 71 Pfam No apical meristem (NAM) protein 16 63 IPR003441 GO:0003677|GO:0006355
Seca2g01206 71 SUPERFAMILY NAC domain 11 63 IPR036093 GO:0003677|GO:0006355
Seca2g01206 71 ProSiteProfiles NAC domain profile. 15 71 IPR003441 GO:0003677|GO:0006355
Seca2g01206 71 Gene3D NAC domain 24 70 IPR036093 GO:0003677|GO:0006355
Seca2g01206 71 PANTHER NAC TRANSCRIPTION FACTOR 56 15 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01206 Seca-Chr2 19537075 19537488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01206 3 62 NAC Transcription Factor Family AT5G13180 51.667 1.76e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g01206 NAM 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01206 - - lja:Lj6g3v0227250.1 84.3445