Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01196 ATGGCTTGGAATTCCTTGAAGCTTATCTCCCTCTTTCTCCTTGTTAGCTTCTTCAATTTCGCAAAAGCACAGGATCCTACTCTTATTTACCAAGAATGCTTGGGAAATGAAATTGAAAAGACTGGAAACGGCGCCCATCAAGTGGACCTCAAGACAACCCTCCTCTCTTCCTTATCTTCCAACGCCACCACCAAAAAATTCTATAACACCACAGTTATTGGCTCCAACTCAGTCGTCTATGGACTGTTCATGTGCAGGGCTGATGTACCCTCTCAGCTCTGCCGACACTGCGTCGTAAACGCATCCCAGTCACTACTACATGAGTGCTCATCCAATCAATCAGTAGTTTGGTACGAGGAGTGCATGGCTCGTTATTCCAACGTATCTTTCTTCTCCACTGTGGAAACATACCCTTTTTTATTCGAGTGGAGCCACGCCAATGTCTCCAACCAGGCAAGTTTCAGTCCTTTATTGTTCAAAACCATGAACCAAATTGCAAACGAAGCTGCTGCTGCCAATTCTCCTAATGGTGATAGGTATTTCTCAACTTTTGTCGATAGGTTCGCCACAAAGCAAGTAAACTTATCTGAATCTCAAACGCTTTACACTCTAGCTCAGTGTACTCCAGATCTGTCACCACAAGATTGCAGAATGTGCCTTAGACAAGCAATAGATCAGCTTCGACAAGGAAGTCAAGGAGCAACGATTCTGTTTCCCAGCTGTAACATTAGGTATGAATTATACCCTTTCTATCTCGCCCCTAATGTGGCACCAGGAGGACTTGTTCCTGAAACAAAATATCCACAAAAAGATTCAAATTATTCAGAAGAATATTCTGGATATCTTTCCTATAACTGCTCAAGTAACGACGACGTTGCCACCGATAGTGCTTTCCAACGAAACCTCAAGCTCGTCCTCTCTGATTTGTCTTCCAACGCAACCGTCAACGGCGAAAAATTCTTCCAAACCGACGCCTCTGAAACAGTGTTTGGCCTCTTCATGTGCCGTGGCGACATTTCTCCTCTGCTCTGTGGAAAGTGTGTTCAAAACGCTACTCGCCGAATAGCGTCTCGTTGTCGTTCATCGAGGGAGGCTATAATTTGGTACAATCACTGCTTCGTTCGCTATTCCAATCAGTCGTTTTTCTCCAAGGTGGACACAAGTCCCAAATCCGTGACGTTGAATATCACCGATATCTCCTACTACGACAACAAGGATTATTACACATATCTATTATCCAATGCGTTATCTGAAACGGCAAAGCAGACGGCGGTGAGTGGTGAGAGATATGGAACAAAATCGTTAAAGTTGAATAATGAGCAAACGCTCTACATTCTGAGTCAATGCACACAAGATCTATCTAGCGATGGTTGTCGTGGTTGCCTAGAGGATGTGATTGGATCGGCAATTCCATGGTCTACTTTGGGAAGCATAGGAGGAAGAGTTCTATATCCTAGCTGTAACATTAGGTATGAATTATACCCTTTCTATCTTGCCCCTAATATGGGGCCAGGAGGATTTGTTCCTGAAACAAACTATCCAAAAAAAGATTCAATTATCTTGATTGTTGTTCCCATTATTCTTTTGGTGATACTTTTTTCTTTTGCCTACTATTTGATACGAAGAAAGGCAAGAAAGACTTATAGAACTATTCTCAGAGAAAATTTTGGACAAGATAGTACCAGTTTAGAGTCATTGCAATTTGATTTGGCTATAATTGAAGCGGCAACAAATAACTTTTCACACCAGAACAAGATTGGTAAAGGTGGATTTGGAGAAGTTTATGAGGGCATTCTTATTGATGGAAGACATATAGCGGTGAAGAGGCTCTCAAAAACTTCTAGGCAAGGTACAGAGGAGTTCAAAAATGAGATTCTATTGATAGCCAAACTTCAACACCGAAATCTAGTCGCATTCATAGGATTTTGTCTTGAAGAGCAAGAGAAAATACTCATCTATGAATATGTGCCGAACAAGAGCTTGGATTACTTTTTATTTGATACTCAACAACAAAAGCTGTTAAGTTGGTTTGAGCGTCATGAAATTATAGGAGGAATTGCTCGAGGGATTCTTTATTTACATGAATACTCTCGACTTAAAGTTATACACCGTGATCTTAAACCAAGTAACATACTATTAGATGAAAATATGAATCCAAAAATTTCAGATTTTGGTCTTGCTAGAATTGTCGCAATCGATCAAGATGAAGGAAGTACCAACAAAATTGTTGGAACATATGGTTATATGTCTCCAGAGTATGCAATGCTTGGACAATTTTCTGAGAAATCAGATGTTTTCAGTTTTGGAGTAATGGTTTTAGAGATTATCACTGGAAAAAAGAATGCAAGATCTTATGAATCATTCCGTGATGCTGATGGTCTCCTAAACTATGTTTGGAGACAGTGGAGGGATCAAACACCATTGAATGTATTGGACACAAAATTAAAAGAAAATTACTCTGAAATTGAAGTTATTAAATGCATTCAAATTGGTTTATTATGTGTTCAAGAAAACCCAGATGCTAGACCTACAATGGTCACAATTGTTTCTTATCTTAGTAATCACTCGATTGAATTGCCATCTCCCCAAGAACCAGCATTCTTCTTAGAAGAAAGAATGGATCAAAGAATCATTGCAAACCAATCTGTTAATGGTTTTGTACCATTCTCTATCAATGGAATGTCTATAAGTGAATTTCATCCTAGATAG 2709 0.3972 MAWNSLKLISLFLLVSFFNFAKAQDPTLIYQECLGNEIEKTGNGAHQVDLKTTLLSSLSSNATTKKFYNTTVIGSNSVVYGLFMCRADVPSQLCRHCVVNASQSLLHECSSNQSVVWYEECMARYSNVSFFSTVETYPFLFEWSHANVSNQASFSPLLFKTMNQIANEAAAANSPNGDRYFSTFVDRFATKQVNLSESQTLYTLAQCTPDLSPQDCRMCLRQAIDQLRQGSQGATILFPSCNIRYELYPFYLAPNVAPGGLVPETKYPQKDSNYSEEYSGYLSYNCSSNDDVATDSAFQRNLKLVLSDLSSNATVNGEKFFQTDASETVFGLFMCRGDISPLLCGKCVQNATRRIASRCRSSREAIIWYNHCFVRYSNQSFFSKVDTSPKSVTLNITDISYYDNKDYYTYLLSNALSETAKQTAVSGERYGTKSLKLNNEQTLYILSQCTQDLSSDGCRGCLEDVIGSAIPWSTLGSIGGRVLYPSCNIRYELYPFYLAPNMGPGGFVPETNYPKKDSIILIVVPIILLVILFSFAYYLIRRKARKTYRTILRENFGQDSTSLESLQFDLAIIEAATNNFSHQNKIGKGGFGEVYEGILIDGRHIAVKRLSKTSRQGTEEFKNEILLIAKLQHRNLVAFIGFCLEEQEKILIYEYVPNKSLDYFLFDTQQQKLLSWFERHEIIGGIARGILYLHEYSRLKVIHRDLKPSNILLDENMNPKISDFGLARIVAIDQDEGSTNKIVGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIITGKKNARSYESFRDADGLLNYVWRQWRDQTPLNVLDTKLKENYSEIEVIKCIQIGLLCVQENPDARPTMVTIVSYLSNHSIELPSPQEPAFFLEERMDQRIIANQSVNGFVPFSINGMSISEFHPR. 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01196 902 ProSiteProfiles Gnk2-homologous domain profile. 280 381 IPR002902 -
Seca2g01196 902 Pfam Salt stress response/antifungal 52 127 IPR002902 -
Seca2g01196 902 Pfam Salt stress response/antifungal 404 494 IPR002902 -
Seca2g01196 902 Pfam Salt stress response/antifungal 286 379 IPR002902 -
Seca2g01196 902 Pfam Salt stress response/antifungal 148 248 IPR002902 -
Seca2g01196 902 SMART serkin_6 580 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01196 902 Gene3D Transferase(Phosphotransferase) domain 1 656 862 - -
Seca2g01196 902 Gene3D - 279 381 IPR038408 -
Seca2g01196 902 Gene3D - 139 250 IPR038408 -
Seca2g01196 902 Gene3D - 391 496 IPR038408 -
Seca2g01196 902 Gene3D - 26 130 IPR038408 -
Seca2g01196 902 FunFam Cysteine-rich receptor-like protein kinase 25 389 496 - -
Seca2g01196 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Seca2g01196 902 FunFam Cysteine-rich receptor-like protein kinase 25 138 250 - -
Seca2g01196 902 SUPERFAMILY Protein kinase-like (PK-like) 563 872 IPR011009 -
Seca2g01196 902 ProSiteProfiles Protein kinase domain profile. 580 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01196 902 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 873 - -
Seca2g01196 902 FunFam cysteine-rich receptor-like protein kinase 10 656 859 - -
Seca2g01196 902 CDD STKc_IRAK 586 852 - -
Seca2g01196 902 Gene3D Phosphorylase Kinase; domain 1 542 655 - -
Seca2g01196 902 ProSiteProfiles Gnk2-homologous domain profile. 390 496 IPR002902 -
Seca2g01196 902 Pfam Protein kinase domain 581 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01196 902 ProSiteProfiles Gnk2-homologous domain profile. 136 250 IPR002902 -
Seca2g01196 902 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 541 655 - -
Seca2g01196 902 ProSitePatterns Protein kinases ATP-binding region signature. 586 608 IPR017441 GO:0005524
Seca2g01196 902 ProSiteProfiles Gnk2-homologous domain profile. 28 130 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01196 Seca-Chr2 19420192 19429467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01196 281 902 Receptor kinase-like Gene Family AT4G05200 43.578 4.30e-179 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca2g01196 Pkinase 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01196 - - aprc:113852296 1043.49