Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01195 ATGAACCAAACAGCATACGAAGCAGCCAATGGTAACAGCTACGCCACAAAGCAAACAAACTTATCTGAATTTCGGATGCTATACACTCTAGCCCAATGCACACTAGATCTGTCACCACAAGATTGCAGAATGTGCCTACAAGATGTGATTGGATCGGCAATACCATGGTCTCGTTTGGGAAGCGTATGGGGAAGAATTTTATATCCTAGCTGCAACCTGAGGTTTGAATTGTTTCAATTTTACGATCTGGTGGCGCCTGGGGAAGACACTACTACTCCTCAACCTACAGAAACAAGAAGAGGTGGATCACGAACAATTATCTTAGTTGTTGTCCCCATTATTGTTGCGACAATATTCTTCTCGGTAGTCTACTATTTGATACGGAGAAAAACAAGAAAGACATATAAAACTTTTCTCAAAGAAAACTTTGGACATGAAAGTACCGCCTTAGAGCCGTTGCAATTCAACTTGGCTATAATTGAAGTAGCAACAAATAACTTTTCACGTGAGAATAAAATTAGTAAGGGTGGATTTGGAGAGGTTTACGAGGGCATTCTTGTTGATGGAAGACATATATATATAGCCGTAAAAAGGCTCTCAAGAACTTCCAAGCAAGGTGCAGAGGAGTTCAAAAATGAAGTTTTATTGATAGCCAAGCTTCAACACAGAAATCTTGTGGCATTTATAGGATTTTGCCTTGAAGAGCAAGAGAAAATGCTTATATATGAATATGTGCCAAACAAGAGCTTGGATTACTTTTTATTTGATACCCGACAACAAAAGTTGTTAAGTTGGTTTGAGCGCCACCAAATTATCGGAGGGATTGCTCGAGGAATTCTTTATTTACATGAACACTCTAGACTAAAAGTAATTCATCGTGATCTTAAACCCAACAACATATTATTAGATGAAAATATGAATTCAAAAATTTCAGATTTTGGTCTTGCTAGAATTATCGAAATAGATCAAGATGAAGGAAGTACCAACAAAATCATAGGAACATTCGGCTATATGTCTCCGGAGTATGCAATGCTAGGACAATTTTCTGAAAAGTCAGATGTGTTTAGTTTTGGAGTCATAATTCTAGAGATTGTTAGTGGGAAAAAGAATGTTGGTTCTAATGGATCATACCATATTGCCAATGGTCTTCTAAGTTTCGTTTGGAGACAATGGAGGGATCAAACACCATTGAACATATTGGACCCAAGATTGAAAGAAAATTATTCTAAAATTGAATTCATTAAGTGCGTTCAGATTGGTTTATTATGTGTTCAAGGAAACCTAGATGTTAGACCTTCAATGGTGACCGTTAATTCATATCTTAGTAGTCACTCGATTGAATTGCCACCTCCACAAGAACCGACATTTTTCTTGCATGGTAGAATGGATCCAATAATAGTAGCACATGAATCAAATTCTAGTCAATCTACGAATAGTTCTATACCATTCTCTATCAATGACATGTCTATTAGTGAATTTCATCCTCGATAG 1491 0.3696 MNQTAYEAANGNSYATKQTNLSEFRMLYTLAQCTLDLSPQDCRMCLQDVIGSAIPWSRLGSVWGRILYPSCNLRFELFQFYDLVAPGEDTTTPQPTETRRGGSRTIILVVVPIIVATIFFSVVYYLIRRKTRKTYKTFLKENFGHESTALEPLQFNLAIIEVATNNFSRENKISKGGFGEVYEGILVDGRHIYIAVKRLSRTSKQGAEEFKNEVLLIAKLQHRNLVAFIGFCLEEQEKMLIYEYVPNKSLDYFLFDTRQQKLLSWFERHQIIGGIARGILYLHEHSRLKVIHRDLKPNNILLDENMNSKISDFGLARIIEIDQDEGSTNKIIGTFGYMSPEYAMLGQFSEKSDVFSFGVIILEIVSGKKNVGSNGSYHIANGLLSFVWRQWRDQTPLNILDPRLKENYSKIEFIKCVQIGLLCVQGNLDVRPSMVTVNSYLSSHSIELPPPQEPTFFLHGRMDPIIVAHESNSSQSTNSSIPFSINDMSISEFHPR. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01195 496 FunFam Cysteine-rich receptor-like protein kinase 25 1 80 - -
Seca2g01195 496 SUPERFAMILY Protein kinase-like (PK-like) 151 479 IPR011009 -
Seca2g01195 496 FunFam cysteine-rich receptor-like protein kinase 10 245 448 - -
Seca2g01195 496 Pfam Protein tyrosine and serine/threonine kinase 170 371 IPR001245 GO:0004672|GO:0006468
Seca2g01195 496 Pfam Salt stress response/antifungal 14 76 IPR002902 -
Seca2g01195 496 ProSiteProfiles Protein kinase domain profile. 167 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01195 496 SMART serkin_6 167 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01195 496 Gene3D Phosphorylase Kinase; domain 1 128 244 - -
Seca2g01195 496 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 128 244 - -
Seca2g01195 496 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 492 - -
Seca2g01195 496 ProSiteProfiles Gnk2-homologous domain profile. 1 80 IPR002902 -
Seca2g01195 496 Gene3D - 1 80 IPR038408 -
Seca2g01195 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Seca2g01195 496 CDD STKc_IRAK 173 441 - -
Seca2g01195 496 Gene3D Transferase(Phosphotransferase) domain 1 245 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01195 Seca-Chr2 19371050 19377524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01195 8 496 Receptor kinase-like Gene Family AT4G05200 44.401 5.92e-148 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca2g01195 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01195 - - aprc:113852296 702.975