Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01194 ATGGGCAACTGCGGTACCAGAGAGGAATCCGCCGTAGTTTCCAATGCTCAAGTTCAGCAGCTTCATCACGCGTCGTCACTGGGCGCTGGTGGTTCCAGAAACCAAACCGGTGGTGGTGGCGCGATTGAGAAGAAGCACAGTTTGAGACACACTCTGAGTGAGTCCATTTCGGATCTGAGCGAGTCTTGTTCAACTCCTCGCTCCAACAACAGCAACACGCTTCTTTACACTCACGTTATCGCCTTCACGCTCTACGAGCTTGAAACCATAACGAAGAGCTTTCGTGGCGACTATATTTTGGGCGAAGGAGGGTTCGGCACCGTTTATAAAGGCTACATTGACGAGAACGTGAGGGTTGGACTCAAGTCCCTCCCTGTCGCCGTCAAGGTCTTGAACAAGGAGGGACTACAAGGACATCGAGAGTGGCTAACGGAGGTGAATTTTCTAGGGCAGCTTAGGCATCCGAATCTGGTGAAGTTGATCGGGTACTGCTGTGAGGATGACCATAGGTTGCTTGTGTATGAGTTCATGTTTCGAGGAAGTCTGGAAAATCACCTATTCCGAAAGGCAACTGTCCCTTTATCATGGGGTACAAGAATGATGATTGCTCTTGGAGCTGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCAGTAATCTATCGTGACTTCAAAACGTCTAATATATTATTGGACTCTGACTATACAGCCAAGCTTTCTGATTTCGGGCTAGCTAAAGCAGGACCCCAAGGTGACGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGTATGACCTCAGTTTTTCACATGCTCAAATTGTAA 861 0.4843 MGNCGTREESAVVSNAQVQQLHHASSLGAGGSRNQTGGGGAIEKKHSLRHTLSESISDLSESCSTPRSNNSNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWGTRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGMTSVFHMLKL. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01194 286 FunFam Serine/threonine-protein kinase BIK1 61 176 - -
Seca2g01194 286 ProSiteProfiles Protein kinase domain profile. 94 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01194 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Seca2g01194 286 ProSitePatterns Protein kinases ATP-binding region signature. 100 129 IPR017441 GO:0005524
Seca2g01194 286 SUPERFAMILY Protein kinase-like (PK-like) 68 278 IPR011009 -
Seca2g01194 286 Pfam Protein tyrosine and serine/threonine kinase 99 277 IPR001245 GO:0004672|GO:0006468
Seca2g01194 286 Gene3D Phosphorylase Kinase; domain 1 55 176 - -
Seca2g01194 286 PANTHER OS01G0588500 PROTEIN-RELATED 66 278 - -
Seca2g01194 286 MobiDBLite consensus disorder prediction 23 42 - -
Seca2g01194 286 Gene3D Transferase(Phosphotransferase) domain 1 177 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01194 Seca-Chr2 19349353 19353848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01194 69 276 Glycoside Hydrolase AT3G07070 55.607 1.79e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca2g01194 Pkinase 6.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01194 - - gmx:102662348 492.656