Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01192 ATGGCTGCTTGTGCTTTGTTCAGTGCCAATAGTCCTCAAGATGGCAATGTTAATAGTGCTAGTCCTTTGACAAGTGCATCTAACTCCAGCAACAACATGAGCAGTGAAGAACACACCTTACAAGGCATGCCACTTCCACAGCCTCATTGTGAAAGAAAAATGGTCAGAAAAAGAATGGCATCTGAGATGGCTACCACAACACCACACCACAACAACAACAACAACTCTTGTTCTTCTTCTTCCACTCCTAGGTTTCCAAGAAGAACCAACACCAACATGTCCTCCTTGAATTGCAGTTTACCAGCCACAGAAAAAGGAACCACCACAACAACAACAACATCATTAGCCGCAGGTACTTGTAGTAACAACAATAACTATCATTATAATAATAGTAACACCACCACAAATACTACTAATAATAATATTAGTCATTGTAATCCTTTGTCAAGAGATAACGTTGCTACTCTTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGCTTCTACCTTCTTCTTCTTCTTCCTCTGCCTCTTTACCCTCTTCAAACTACACTCATTTTCAACCAATTCTTGAGACCCAAAACCAAGAACAGAACCCTTTACCTGCTGTTTGTGGATTCTCTGGTTTACCACTTTTCCCATCTCAAACCCAAAGAAGCCATAGAGATAATAACAGCAACAATATCAGAAACAGTAGTAGCAGTGTTGTTGTTGACGTGGTTGCTTCTTCTTCTTCTCCTTCAATGGATGATACCTCAGCAACAACTAATTGGATCGATGGGATATTGAAGGATCTTATTCACAGTTCCAACAGTGTTTCTATTCCTCAACTTATAAGCAACGTGAGGGAGATAATATACCCTTGTAATCCCAATCTTGCTGTGGTTCTTGAACATAGGTTGAGACTTCTTACAGAGTCATCCACCCCATCAAACTCTTCTGTTACAGAGAGAAAAAGAACCACAGAAGGGGTTGTTCCACCTCCTCCTCCTCTTACTCCTAATGTTTCTTCTATGAAACTCATGGGTCGTGTAGATGGCATTGTTCCCACTTTACATTTCCCTGATTCATCACCTGTTGTGAATCAAAACATGTTTTCCAATTGGGGTATGCCTCAAATCACCACCCTCCACCACCAAGAAAATGTCAACAACACCAACAACAACAATAACAACAACCCTTCTGTTTCTTTGGTTGCTTTACCTTCACCATCTACACACCAGGGCTATTCACCAACACAAGAAAAGCAGCAACAGCAACATCAGCAGCATCAGCCTCAGCAAGAGGAAGATCTTGCAGCAACAACAAGCAGTGCTGCTGAGATGGTTGTGTTAACTAGAAAGAAGAAAGAGGAGTTAAGAGAACAGAAGAAGAAAGATGAAGAGGGTTTACACCTTCTGACTTTGTTGCTTCAGTGTGCAGAAGCAGTATCAGCTGAGAATCTAGAAGATGCCAACAAGATGTTGCTTGAAATTTCCCAACTTTCTACACCATTTGGTACATCAGCACAGCGTGTTGCAGCATATTTCTCAGAAGCCATATCAGCAAGACTAGTTAGTTCATGTTTGGGAATATATGCATCTCTTCCTCACACCCACCAAAGCCATAAGGTAGCATCAGCTTTCCAAGTCTTCAATGGAATCAGCCCTTTTGTAAAGTTCTCACATTTCACTGCAAACCAAGCTATACAAGAAGCTTTTGATAGAGAAGAGAGGGTGCATATCATAGATCTGGACATAATGCAGGGTTTGCAATGGCCTGGTTTATTTCATATCCTTGCTTCAAGACCTGGTGGACCCCCTTATGTGAGGCTCACAGGGTTAGGTACTTCCATGGAAGCACTTGAAGCAACTGGTAAACGTTTGTCTGATTTTGCTAGTAAACTTGGCCTTCCCTTTGAGTTCTTCCCAGTTGCTGATAAAGTTGGGAACCTTGACCCTGAGAGGCTTAATGTTAGCAAAACTGAAGCTGTTGCTGTTCATTGGTTGCAACATTCACTCTATGATGTCACTGGATCAGATACAAACACTTTGTGGCTCTTGCAAAGGTTGGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACCTGAGCAACGCTGGTTCTTTCTTAGGAAGGTTTGTGGAAGCCATACACTATTACTCAGCATTATTTGATTCTCTTGGGTCTAGCTATGGAGAGGAAAGTGAAGAGAGACATGTGGTGGAGCAGCAGCTACTATCTAGGGAGATTCGTAATGTGCTAGCAGTTGGGGGCCCATCAAGAACTGGAGAGATCAAGTTCCATAACTGGAGAGAAAAGCTTCAACAGTGTGGGTTTAGAGGTATTTCACTAGCTGGTAATGCTGCCACACAAGCAAGTTTACTCCTTGGCATGTTCCCTTCTGAAGGGTATACCTTAGTGGAGGATAATGGGATCCTTAAACTTGGTTGGAAAGATCTTTGCTTGCTTACTGCTTCAGCTTGGAGACCTCCCTACCATAGTAGCACTGCCATTACTCATCATAACTAA 2520 0.4246 MAACALFSANSPQDGNVNSASPLTSASNSSNNMSSEEHTLQGMPLPQPHCERKMVRKRMASEMATTTPHHNNNNNSCSSSSTPRFPRRTNTNMSSLNCSLPATEKGTTTTTTTSLAAGTCSNNNNYHYNNSNTTTNTTNNNISHCNPLSRDNVATLPNYPTVTVTTNYSTMLLPSSSSSSASLPSSNYTHFQPILETQNQEQNPLPAVCGFSGLPLFPSQTQRSHRDNNSNNIRNSSSSVVVDVVASSSSPSMDDTSATTNWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAVVLEHRLRLLTESSTPSNSSVTERKRTTEGVVPPPPPLTPNVSSMKLMGRVDGIVPTLHFPDSSPVVNQNMFSNWGMPQITTLHHQENVNNTNNNNNNNPSVSLVALPSPSTHQGYSPTQEKQQQQHQQHQPQQEEDLAATTSSAAEMVVLTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYASLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFASKLGLPFEFFPVADKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPYHSSTAITHHN. 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01192 839 Pfam GRAS domain family 471 826 IPR005202 -
Seca2g01192 839 MobiDBLite consensus disorder prediction 386 440 - -
Seca2g01192 839 MobiDBLite consensus disorder prediction 311 342 - -
Seca2g01192 839 MobiDBLite consensus disorder prediction 9 41 - -
Seca2g01192 839 ProSiteProfiles GRAS family profile. 461 826 IPR005202 -
Seca2g01192 839 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 421 821 IPR005202 -
Seca2g01192 839 MobiDBLite consensus disorder prediction 64 106 - -
Seca2g01192 839 MobiDBLite consensus disorder prediction 6 47 - -
Seca2g01192 839 MobiDBLite consensus disorder prediction 219 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01192 Seca-Chr2 19281115 19284144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01192 430 827 GRAS Transcription Factor Family AT3G54220 81.818 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca2g01192 GRAS 8.3e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01192 - - gmx:100803919 1094.72