Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01188 ATGGCAGAGGGAAAAGGCAGAGTCTGTGTCACTGGAGGAACAGGGTTTCTTGGTTCATGGATCATCAAGAGACTCCTTGAAGATGGTTACTCTGTTAATACCACTATTAGATCTAATCCAGCAGGACGTAAGAGAGATATAAGCTTCCTAACAAATTTACCTGGTGCATCCGAGAAGCTACAGGTTTTCAATGCTGATCTGAGCAACCCAGAAAGTTTTGGTCCTGCAGTTGAAGGGTGTGTTGGGATATTCCACACTGCATCTCCAATTGATTTTGCAGTGAACGAACCAGAGGAAGTAGTTACCAAAAGAACGGTTGATGGAGCATTAGGAATTTTAAAAGCATGTGTAAATTCAAAGACAGTGAAGAGGGTTGTTTACACTTCAAGTGGCTCTGCTGTTTCCTTCAGTGGTGCAGAGGGTGATGTATTGGATGAGAGTAGTTGGAGTAATGTGGATTTGCTTAGAAGTGTGAAACCATTTGGTTGGTCATATGGAGTTTCCAAGACCTTGGCAGAGAAAGCTGTCCTTGAATTTGGGGAACAAAATGGGATTGATGTTGTCACTTTGATACCTACTTTTGTTGTTGGAAGATGGGTTTGTCCTAAGCTTCCTGACTCTGTTGAGAAAGCTCTCGTTTTGGTATTAGGTATGAATCTACAGCTTATTCAATCAACACCTGTTTCTTCCATTTCTTTCTTTTTTTTTTTCTTTGTTCAAAAATTGAGTTGCAAAAAGGACCAAATTAATGTCACTCGTTACCATATGGTACATGTGGATGATGTGGCTAGAGCACATATATTCCTGCTTGAGCATCCTAATGCAAAAGGGAGATTTAATTGCTCACCATTCATTGTATCTATTGAAGAGATGTCTGAACTTCTTTCAGCCAAATACCCTGAATTTCAAATACCAACAGTAGACGAGGTGAAGGAAATTAAAGGTGTCAAGTTACCACATTTGATCTCGAAGAAACTAGTGGATGCTGGTTTCGAGTTCAAGTATAGCGTTGAGGATATGTTTGACGATGCAATTCAATGCTGCAAGGAAAATGGTTATCTTTAA 1065 0.3991 MAEGKGRVCVTGGTGFLGSWIIKRLLEDGYSVNTTIRSNPAGRKRDISFLTNLPGASEKLQVFNADLSNPESFGPAVEGCVGIFHTASPIDFAVNEPEEVVTKRTVDGALGILKACVNSKTVKRVVYTSSGSAVSFSGAEGDVLDESSWSNVDLLRSVKPFGWSYGVSKTLAEKAVLEFGEQNGIDVVTLIPTFVVGRWVCPKLPDSVEKALVLVLGMNLQLIQSTPVSSISFFFFFFVQKLSCKKDQINVTRYHMVHVDDVARAHIFLLEHPNAKGRFNCSPFIVSIEEMSELLSAKYPEFQIPTVDEVKEIKGVKLPHLISKKLVDAGFEFKYSVEDMFDDAIQCCKENGYL. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01188 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 349 IPR036291 -
Seca2g01188 354 Gene3D - 5 354 - -
Seca2g01188 354 Pfam NAD dependent epimerase/dehydratase family 8 280 IPR001509 -
Seca2g01188 354 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 345 - -
Seca2g01188 354 FunFam Dihydroflavonol reductase 5 354 - -
Seca2g01188 354 CDD FR_SDR_e 8 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01188 Seca-Chr2 19209259 19211262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01188 4 354 Monolignol Biosynthesis Gene Families AT2G02400 33.983 3.48e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01188 - K13265 gmx:100194416 540.421