Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01178 ATGGAAGGGAGAGAAGGTATGAGCTCAGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAACCTATCATGTGGCACCAAGGAGTGAAGCTCCAAGCCAGGGTCCTATTCCTGAACCAGGAGCTGCTGCTATTGGTGTCTCACCAGTGAGTGTGGGATTGGATGGTTCAGCAGTTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGACCAGATGGGGCTGTCACTATGGCATTGTCACCATTGCCAATCTCATCTTCAGCTCCATTTTCTAATGACTTTTCATCCGGGAAGCGGGGGAAACCGCGGGCGGTGGAGTACAAGCAGTCCAAAAAAGTTGGAGTGGATCATCTAGGTGAATCTGTTGGTACAAACTTTATGCCACATATCATTACCGTCAATGCTGGAGAGGACATTACAATGAAGGTTATATCTTTTTCCCAGCAAGGACCCCGAGCTATATGCATCCTATCTGCCAATGGTGTAATTTCAAATGTTACTCTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATTCTTTCATTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCTGGTGGGATGAGTGTTTCTTTGTCAAGTCCAGACGGTCGCGTTGTCGGTGGTGGAGTTGCTGGTCTTCTTATAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAGCAACCAGCAAGACCAGAAGCCAAAGAAGCCCAAGTCTGATTATGTACCGCCAGTTACTATTACCCCAGCCATTGCAGTGTCTTCTGCACCACCCCCAACTAATGGTGAAAAAGAGGATATAATGGTTGGACATCTACTGCAAAATTCAGGAACCCTTAACCCAAACCTTACTTCTCCTCCCTCAGCCTTCAGAAGAGAAAATTGGGTTAATATGCACTCTATGTCAGACACAATGAAGTCTGCAACTGATATCAACATATCTTTGCCTGATAGTTAA 1005 0.4667 MEGREGMSSGVTVIGAEAPSTYHVAPRSEAPSQGPIPEPGAAAIGVSPVSVGLDGSAVKKKRGRPRKYGPDGAVTMALSPLPISSSAPFSNDFSSGKRGKPRAVEYKQSKKVGVDHLGESVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLIAASPVQVVVGSFLPSNQQDQKPKKPKSDYVPPVTITPAIAVSSAPPPTNGEKEDIMVGHLLQNSGTLNPNLTSPPSAFRRENWVNMHSMSDTMKSATDINISLPDS. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01178 334 ProSiteProfiles PPC domain profile profile. 122 264 IPR005175 -
Seca2g01178 334 MobiDBLite consensus disorder prediction 20 47 - -
Seca2g01178 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 244 - -
Seca2g01178 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 308 IPR039605 GO:0003680
Seca2g01178 334 Gene3D - 127 256 - -
Seca2g01178 334 CDD DUF296 127 240 IPR005175 -
Seca2g01178 334 FunFam AT-hook motif nuclear-localized protein 1-like 127 257 - -
Seca2g01178 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01178 Seca-Chr2 19021598 19026406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01178 6 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.756 6.12e-98 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01178 - - gmx:100777213 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01178 2 19021598 19026406 Seca2g01178 2 19021598 19026406 ECH
Seca4g11105 4 249313738 249316572 Seca2g01178 2 19021598 19026406 PCT