Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01170 ATGAATCTAAACTCAGGCAGCAGCAGTGGTAGTGGTAGTGGTGGCGCTGGTACCGGTGCCAGTGCTAGTACCGGTGTCGGTGGCGGTGGTGGTGGTGGCAGCAGCGGCGGTAGTCCATGTGGGGCTTGCAAATTTTTGAGGAGGAAGTGTGTGCAAGGGTGCATCTTTGCTCCATACTTTGACTCAGAGCAAGGTGCAAGCCACTTTGCAGCGGTTCACAAGGTGTTTGGGGCCAGCAACGTGTCTAAGCTCCTCCTCAGCATTCCAGTGAATAGGAGGCTTGATACTGTGATCACCATTTGTTATGAAGCACAATCAAGGTTGAGAGATCCAGTCTATGGTTGTGTTGGACACATCTTTGCCCTTCAGCAACAGGTAGTGATGAGTTTACAAGCAGAACTCTCCTACTTACAAGGTCACCTTAATGCAATGGAGTTACCCCAACCGCCGCCGCCGCCTCCTCCACCGCAAGCGCCGATGGCACCACCGTTTTTGTCATTTTCTGACTTACCACCCGCCACCACCGCAGCTATGCCAGTTGCCTATGACTTAGCTACACTTTTTGAGCCAATGGCCCAAACTTCATGGGCCATACAACAAAGGGCCATGGACCAACGTCAATACCTGTCTGCAGGCCCATCATCAACAACCAGTGGATCTCTTCAAGCAGTGGCGCGTGAGCTTTCAAACAGACATGGGTCTTCATCTACACTTCCTATGCCATCCTCCAATGCTTCATCATCTCTTTCACTTTCTAAGTGA 762 0.5131 MNLNSGSSSGSGSGGAGTGASASTGVGGGGGGGSSGGSPCGACKFLRRKCVQGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLLSIPVNRRLDTVITICYEAQSRLRDPVYGCVGHIFALQQQVVMSLQAELSYLQGHLNAMELPQPPPPPPPPQAPMAPPFLSFSDLPPATTAAMPVAYDLATLFEPMAQTSWAIQQRAMDQRQYLSAGPSSTTSGSLQAVARELSNRHGSSSTLPMPSSNASSSLSLSK. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01170 253 MobiDBLite consensus disorder prediction 1 21 - -
Seca2g01170 253 MobiDBLite consensus disorder prediction 208 253 - -
Seca2g01170 253 ProSiteProfiles LOB domain profile. 38 141 IPR004883 -
Seca2g01170 253 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g01170 253 PANTHER LOB DOMAIN CONTAINING PROTEIN 36 173 - -
Seca2g01170 253 Pfam Lateral organ boundaries (LOB) domain 39 137 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01170 Seca-Chr2 18907840 18911983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01170 42 234 AS2 family AT2G45420 58.852 3.49e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca2g01170 LOB 5.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01170 K21994 - gmx:100777737 286.189