Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01163 ATGAGTTCGATGAGGTGCTTACTGAATTTGCATCACAGAAGCGTGTCTATGAAGTTGTGGCTAAGCCGGTTGTGGAGGTCTGTTAGGATGGTGGACATCCTCATTAGTGTTCTTGATGGTTATAATGGGACTGTGATGGCATATGGTCAAACTGGAACGGGGAAAACTTTTACCCTTGGACGACTGGGGGAAGGAGACACCTCTGATCGTGGTATAATGGTTCGTTCCATGGAGGATATTCTTGCTGACTTATCTCCAGATACTGATTCTATCACTGTCTCGTATCTGCAGCTTTACATGGAGACTCTCCAGGACTTGCTTAATCCAGCAAATGATAACATTCCTATTGTGGAAGATCCAAGAACCGGCGATGTATCCATGCCTGGGGCAACGCTTGTAGAAATCAGGGACCAACAGAATTTTTTGGAGTTGTTAAGAATAGGGGAAGCTAATCGAGTTGCTGCTAACACAAAATTGAATACCGAATCTTCTCGTAGTCATGCTATTCTGATGGTACATATTAAGAGGTCTGTCATGGAATGTGAAGATATTGTGTCTAGTCAAAATGGTGATGCCTCTCACTTGACTAAACCTTCAAAGCCACTTGTTCGGAAGAGCAAGTTGGTTGTGGTAGACTTAGCAGGTTCAGAGCGTGTCCATAAGTCAGGAAGTGAAGGACACATGCTAGAGGAAGCTAAATCTATCAATCTTTCACTTAGTTCACTTGGAAAATGTATCAATGCTCTGGCAGAGAACAATGCTCATGTCCCATTTCGTGATTCAAAGCTTACCAGGATGCTCCGAGATTCTTTTGGTGGAACGGCTAGGACTTCATTGATTGTGACTATTGGCCCGTCTCCACGTCATCGAGGAGAGACTTCTAGTACCATATTGTTTGGCCAAAGGGCTATGAAAGTTGAGAATATGCTGAAAATAAAGGAGGAGTTTGATTATAAAAGCTTGTCTCGAAAGCTTGAGGTACAATTAGATAAGCTTATTGCGGAAAATGAAAGGCAACAGAAAGCTTTTGAGGATGAAGTTGAAAAAATAAATTTAGAGGCACAATGTCGTATTGCTGAGGTTGAGAGAAACTTCGCAGATGCACTAGAGAAAGAGAGATTGAAGTGCCAAATGGAGTACATGGAATTGGTAAAGGAGCTGGAGCAGAAGTTGGTGTTAAATCAGGAAAGCCATGACCACAATAATTTTGTGGCTGATCATGGAGAGGGGCTGGCACTATCTTCTGCAGATGAAGTTGCTGAGGTCAAAATGCTGCTTGAAACTGAAATCAAGCGCAGAAAGGCAGCTGAAGAAGAGGTAGAACATCTAAAGAATCAGCTAGGGAAATGTACTCAAGCAGAGGCAGGAGGGGATTTGGAGATTATAAAGCTCCACAACATCCTGGAGGATGAAGCTAATCAGAAAAAGAAACTTGAAGAAGAAATAATAATATTAAGAAGTCAATTATTGCAATTGAACTTTGAAGCTGACCAGATGAGAAGGTGTTTAGAAAATGGAAGCTCTGGGAGTACATTTTCTGCCATGGATTCCTCCATGAGGCATTCCCAATTCAAAGACACTGGGAATGGTCAGAAGTCATCTGTTGCTACACTCTTTGAGCAAGTTGGATTGCAAAAGATTTTGTCATTGCTGGAGTCAGATGATGCCAATGTGCGAATTCATGCTGTAAAAGTGGTAGCCAACCTAGCAGCTGAAGAGGCTAATCAAAAGAGAATTGTTGAATCTGGTGGTCTTACTTCCTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCTAACCTTGCTATGAATGAAGCGAATCAAGAACTTATAATGGCTGAAGGAGGAATCACTCTGTTATCAATGACTGCATCTGATGCTGAAGATCCACAAACTCTTCGAATGGTTGCCGGGGCAATTGCTAACTTATGTGGAAATGATAAAATATTGATGACTCTAAGATCTCAAGGAGGTATCAAGGCTTTACTGGGAATTGTAAGATGTGGGCATCCAGATGTTCTTTCCCAAGTTGCACGAGGAATTGCTAACTTTGCAAAATGCGAGTCTCGGGCCTCTAATCAAGGGATAAAAAGTGGTAGATCTATTTTGATAGAAGATGGTGCACTTCCGTGGATAGTACAAAATGCTAATAATGAAGCTGCACCTATCAGGCGTCACATCGAGCTTGCACTATGCCACTTGGCACAGCATGAAGTGAATGCAAAAGACATGATTAGCGGAGGTGCTCTTTGGGAGCTTGTCAGGATTTCACGGGATTGTTCACGAGAGGACATACGGAGTCTTGCTCGTCGAACTCTCAGTTCTATCCCAACATTCAAATCTGAATTGCGGCGATTACGTATAGATTATTGA 2403 0.4245 MSSMRCLLNLHHRSVSMKLWLSRLWRSVRMVDILISVLDGYNGTVMAYGQTGTGKTFTLGRLGEGDTSDRGIMVRSMEDILADLSPDTDSITVSYLQLYMETLQDLLNPANDNIPIVEDPRTGDVSMPGATLVEIRDQQNFLELLRIGEANRVAANTKLNTESSRSHAILMVHIKRSVMECEDIVSSQNGDASHLTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQQKAFEDEVEKINLEAQCRIAEVERNFADALEKERLKCQMEYMELVKELEQKLVLNQESHDHNNFVADHGEGLALSSADEVAEVKMLLETEIKRRKAAEEEVEHLKNQLGKCTQAEAGGDLEIIKLHNILEDEANQKKKLEEEIIILRSQLLQLNFEADQMRRCLENGSSGSTFSAMDSSMRHSQFKDTGNGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVESGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNDKILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSILIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRSLARRTLSSIPTFKSELRRLRIDY. 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01163 800 PRINTS Kinesin heavy chain signature 40 61 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca2g01163 800 PRINTS Kinesin heavy chain signature 256 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca2g01163 800 PRINTS Kinesin heavy chain signature 207 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca2g01163 800 CDD KISc 32 304 - -
Seca2g01163 800 SUPERFAMILY ARM repeat 536 787 IPR016024 -
Seca2g01163 800 Pfam Kinesin motor domain 32 306 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca2g01163 800 SMART kinesin_4 1 314 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca2g01163 800 Coils Coil 461 495 - -
Seca2g01163 800 Pfam Armadillo/beta-catenin-like repeat 575 612 IPR000225 GO:0005515
Seca2g01163 800 Coils Coil 322 386 - -
Seca2g01163 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Seca2g01163 800 ProSiteProfiles Kinesin motor domain profile. 1 306 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca2g01163 800 Gene3D Kinesin motor domain 25 337 IPR036961 -
Seca2g01163 800 Gene3D - 633 797 IPR011989 -
Seca2g01163 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 583 626 IPR000225 GO:0005515
Seca2g01163 800 Gene3D - 527 632 IPR011989 -
Seca2g01163 800 FunFam Kinesin-like protein 512 788 - -
Seca2g01163 800 SMART arm_5 572 613 IPR000225 GO:0005515
Seca2g01163 800 SMART arm_5 614 655 IPR000225 GO:0005515
Seca2g01163 800 SMART arm_5 532 571 IPR000225 GO:0005515
Seca2g01163 800 SMART arm_5 656 696 IPR000225 GO:0005515
Seca2g01163 800 Coils Coil 790 800 - -
Seca2g01163 800 Coils Coil 419 453 - -
Seca2g01163 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 341 IPR027417 -
Seca2g01163 800 ProSitePatterns Kinesin motor domain signature. 206 217 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca2g01163 800 PANTHER KINESIN-RELATED 33 522 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01163 Seca-Chr2 18822535 18837441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01163 36 353 Calmodulin-binding Proteins AT5G65930 36.000 5.38e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01163 - K10396 gmx:100789455 1370.91