Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01157 ATGGCGACTAATCTTCTTGCAACTGGTTCTACTACGACGCCGTCGTCTCAGGACAAACGACACCGTTCGATCTTCGAACTTCAACCAGACTTCTTCCATTCTTGTCGCCTTCTCCATTCTCCCCACTCATCCGTTTCCGAGCGTCACCACCATGCAGGCATCGAAACCCTTGAACCACCGTCAAACGACGTCGTTGCCGTTGATGATACTCAAAACGGAGTTTCGGCGCCTAGGTGGACCTGCAACACCTGCAAGGCTCAATTCAATTCCCTTCAAGACCAGCGTTCTCATTTCAAATCCGACATTCATCGATTCAATGTGAAGCTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGATTTTGTCAGAGACTATGATGTGTCAAGCATATCTGGATCAGAAAGTGATGATGACAGTGAAACTGAGTCTCAAAGTCAAAATGAAGTGCGTGATAAATCAAACCTAAGTTTTAAACAAAAGCTATTCATCGGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGTTTGATTATGGATGTGAATGAAAATTTATTGTATGGGAATGAAAAAGTGGAGAATGAAGTGGTTGAGAGGTTGAAATCTCTGATTATTGAGCCAAGGGATAATACCCATTTGAGGATTGTTCTGCTAGCATCTGGTGGGCACTTTGCGGGTTGTGTCTTTGATGGTGATACGGTTGTGGCTCACAAGACATTTCACAGGTATGTTGTAAGGGCCAAGGCAGGAAAAAAACAGTCATCTAAAGATGCTTCTGGCAGATCTATACATTCTGCTGGTGCTTCACTTCGTCGTTATAATGAACTTGCATTAAAAAAGGAAGTTCAAGAACTGCTTACTGCTTGGAAACCTTATTTTGATGCATCTAGATGCATTTTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAAACCATATTTTACCAATCAGCAGTGTGCTGTTAGAAATATTGCTATGAGTGTTCGTAGGCCTACTTTCCGGGAAGCAAAGCGTGTACATAGCCAGTTGACCCAAGTATACTATGAAGCGGATGAGAAGGAAATTTTACAAAGCAACAAAGAGGACTTGGTTCCTATTCACATTGCTAAAAGAAATGGCAGCCCACCCTCCAGCAAAGGAGACGTGACTGGGTTGGATGTCGAAGATAAAGCTGAAGCTTGTTCAAGTAAACAAAATGATGAACCTATTTCAAGTAATGGAGAAAGTGAGAATGAGCTACCTGCTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGTGACTCTCAAAAGGTTATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATCAAAGATGAAAGGGGACGGACCCCATATATGTTGGCACATGACAAGGAAGTCAGGAATGCTTTTAGAAGGTTCATGGCATCAAATCTTGAGAAATGGGATTGGCATGCTGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAACAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGGCTCAGGCTGAAGCTTCCTTGCTTAAGAATGATTCCAAAACTGTAGAAAGGCAATTGACTGCTCCAGTATCTTTTAAGGGAGAATCTCAACCAAAAAGTGGTGTGCAATTATCAAAAGAGGAGGAAATAAGAAGAGCACAGGCTGCAGAAAGAGAGAAGAGAGCAGCTGCCGCAGAGAGAAGAATAGCTGCCCTTAAAATTCAAGTTAATAGTGCAACCACTGCATCTAGCAATTCAGAGCCTAAAAGTGGATTATCCGGTGACATCTATTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGTTATAATTACAAATACTGCAGCACATCATGCATGCATGTGCACAGGGAGATCCTAGAAGATGAATGA 1989 0.4208 MATNLLATGSTTTPSSQDKRHRSIFELQPDFFHSCRLLHSPHSSVSERHHHAGIETLEPPSNDVVAVDDTQNGVSAPRWTCNTCKAQFNSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSDFVRDYDVSSISGSESDDDSETESQSQNEVRDKSNLSFKQKLFIGLQTGQRVSVWKCLIMDVNENLLYGNEKVENEVVERLKSLIIEPRDNTHLRIVLLASGGHFAGCVFDGDTVVAHKTFHRYVVRAKAGKKQSSKDASGRSIHSAGASLRRYNELALKKEVQELLTAWKPYFDASRCIFIHAPSSSRQLLYDGEKPYFTNQQCAVRNIAMSVRRPTFREAKRVHSQLTQVYYEADEKEILQSNKEDLVPIHIAKRNGSPPSSKGDVTGLDVEDKAEACSSKQNDEPISSNGESENELPAKSTPLHQAAQSGDSQKVMELLEQGLDPCIKDERGRTPYMLAHDKEVRNAFRRFMASNLEKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKAQAEASLLKNDSKTVERQLTAPVSFKGESQPKSGVQLSKEEEIRRAQAAEREKRAAAAERRIAALKIQVNSATTASSNSEPKSGLSGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDE. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01157 662 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g01157 662 Coils Coil 574 610 - -
Seca2g01157 662 ProSitePatterns Zinc finger C2H2 type domain signature. 81 103 IPR013087 -
Seca2g01157 662 SUPERFAMILY beta-beta-alpha zinc fingers 65 110 IPR036236 -
Seca2g01157 662 MobiDBLite consensus disorder prediction 410 442 - -
Seca2g01157 662 Pfam Bacteroidetes VLRF1 release factor 223 361 IPR041175 -
Seca2g01157 662 Pfam Vms1-associating treble clef domain 626 657 IPR041540 -
Seca2g01157 662 MobiDBLite consensus disorder prediction 136 159 - -
Seca2g01157 662 SUPERFAMILY Ankyrin repeat 430 481 IPR036770 -
Seca2g01157 662 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 661 IPR047139 -
Seca2g01157 662 MobiDBLite consensus disorder prediction 570 584 - -
Seca2g01157 662 Coils Coil 504 553 - -
Seca2g01157 662 MobiDBLite consensus disorder prediction 556 584 - -
Seca2g01157 662 MobiDBLite consensus disorder prediction 403 442 - -
Seca2g01157 662 Gene3D - 347 491 IPR036770 -
Seca2g01157 662 MobiDBLite consensus disorder prediction 1 18 - -
Seca2g01157 662 ProSiteProfiles Ankyrin repeat profile. 428 460 IPR002110 GO:0005515
Seca2g01157 662 ProSiteProfiles Ankyrin repeat region circular profile. 428 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01157 Seca-Chr2 18641156 18648342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01157 19 609 C2H2 Transcription Factor Family AT1G01930 55.464 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01157 K26089 - gmx:100527709 956.051