Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01153 ATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGATGATGTTGCTGGCCTTGAGAAGGCAAAGCAAGCTTTGATGGAGATGGTTATTTTGCCAGCTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAACGATGCTAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTGATTGGTGCGACCAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAAAGAATATACATACCTTTACCAGATGAAAATGTTCGGAAACTTCTGCTAAAAAACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAAATGCTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTTCTAACATTCTCACTGTTAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGATTTCAAGAAAGCAATGGCTACCATCAGACCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAGTTTGGCTCTAATTGA 864 0.4144 MINTAIVDRSPSVRWDDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRKLLLKNKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVKANQVRGLRYEDFKKAMATIRPSLNKSKWEELERWNEEFGSN. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01153 287 Pfam Vps4 C terminal oligomerisation domain 253 285 IPR015415 -
Seca2g01153 287 CDD RecA-like_spastin 17 180 - -
Seca2g01153 287 Gene3D - 183 265 - -
Seca2g01153 287 FunFam AAA-type ATPase family protein 183 265 - -
Seca2g01153 287 Pfam ATPase family associated with various cellular activities (AAA) 52 182 IPR003959 GO:0005524|GO:0016887
Seca2g01153 287 FunFam Spastin, putative 11 197 - -
Seca2g01153 287 Pfam AAA+ lid domain 207 238 IPR041569 -
Seca2g01153 287 PANTHER AAA DOMAIN-CONTAINING 1 286 - -
Seca2g01153 287 SMART AAA_5 48 184 IPR003593 GO:0016887
Seca2g01153 287 ProSitePatterns AAA-protein family signature. 154 173 IPR003960 GO:0005524|GO:0016887
Seca2g01153 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 284 IPR027417 -
Seca2g01153 287 Gene3D - 11 281 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01153 Seca-Chr2 18577261 18584270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01153 11 237 Calmodulin-binding Proteins AT3G56690 42.918 1.11e-48 171