Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01122 ATGGTGAGAGGAAAGACTCAGATGAGGCGTATAGAGAACGCCACAAGCAGACAAGTAACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAAGCTTTTGAACTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGAAAACTTTATGAATTTGCAAGCTCCAGGTACGGACCATCCTCAACAATTTTTTTCTTTTTTCTTTTTTGTTACAAATTGATAGTGCTATATATTTTGCATCTTCATGTAAATGTTTCTTCAATTTGTTATTAG 288 0.3681 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSRYGPSSTIFFFFLFCYKLIVLYILHLHVNVSSICY. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01122 95 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca2g01122 95 SUPERFAMILY SRF-like 3 62 IPR036879 GO:0003677|GO:0046983
Seca2g01122 95 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Seca2g01122 95 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca2g01122 95 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Seca2g01122 95 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Seca2g01122 95 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca2g01122 95 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca2g01122 95 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca2g01122 95 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca2g01122 95 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca2g01122 95 FunFam Agamous-like MADS-box protein AGL13 13 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01122 Seca-Chr2 18076176 18076463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01122 1 60 MADS-box Gene Family AT2G45660 95.000 2.15e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca2g01122 SRF-TF 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01122 - - csin:114271213 120.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01122 2 18076176 18076463 Seca2g01122 2 18076176 18076463 ECH