Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01115 ATGGATAAATATGGGTCATCTCCTCCATACCGGTATCCAAACCCATATGTGTACCCTCCTAACCCTCATCCACCATACCCACCTCCAAGTCCAGCTCCTGATCCATATGCACATGCTCCTTATCCATATCCTTACTTTTCTTCACATTCCTTCAACTATTCCTATCCTCCACCTCCTAGATTACCCCCATCACCCTCCCATTCTGGTCCATTGGAATATTCTTACCCCCCTCCTCATCAAGCACCCTCCTCAGCCCCTCCTACTGCCCCCTCTTACCCTTATCCCTACCATATTCCTCCAGGGAGTCATAGTTCTCCTAGGCCTTCCCTTTCACACCATCCTAGTTTACCACATGGATCATCTCATTACTATTATCAACAAAATGAGGCCTATTCATCTCATGAAGATAAACCTGGTGCCCATATGCATGCCAATAGCTTCTCTGGCCCCTACTGGCAGGAGACCCCAAGCTCCACAGGAGGTGAAGAAGTATCACAAACTAGTATTGGTTCCAAGCCTTCTCAGAGTTCTGCTTACCCACCTTTGGATGATCTTATGAACAATGTCCAGTTGTCTGATAACCAGCCAAGTGCTCCTGCATCACCCCCTGCACCTGCAGTGCAGCCACTGATGCATTCCATGTCAGTTCCAAAGATACAACAGAAGAAGGAGGAGTTTTATGGATATTCTAATAACTCCTTCTCGGGTTGGGGATCCTCCTACCCTGGTCAGGTGGATTCATCTAAGCTTTCAGAATTTTCTGGCTCATTTAATGAATCAGTGCATAGTCAGAGTTTGCAGATTGTTCCAATGCAGAATAAAGGATCCTTGAGAGTTTTGCTCCTACATGGAAATTTAGATATATGGGTTCTTCAAGCCAAAAATCTTCCAAATATGGACATGTTCCACAAAACATTGGGAGACATGTTTGGTAGATTACCTGGTAATGTGAGCAATAAAATTGAAGGAACTGTGAATAGGAAGATTACTAGTGATCCTTATGTGTCAATTTCAGTATCAAATGCTGTAATTGGGAGGACTTTCGTCATTAGCAACAGTGAAAATCCTATTTGGATGCAACATTTCTATGTTCCTGTTGCACATCATTCGGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATGTTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAACAAATATACTCAGGGGAAAAAGTTGAAGGAACCTACCCTATCCTGAATAATAATGGAAAGCCTTGTAAGCAAGGTGCTGTTCTGAGCCTATCCATTCAGTACATCCCAATGGAGAGGCTAAGCATTTATCATCAAGGAGTTGGAGCAGGGCCTGAGTACATTGGTGTTCCTGGCACATATTTTCCTTTGAGGAAAGGTGGAGCTGTTACTCTATATCAAGATGCTCATGTCCCAGATGGAACCCTCCCTAATGTTTTGCTTGACAATGGGACATATTATGTACATGGAAAGTGTTGGCATGACATCTTTCATTACATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGATGGTCAGTATGGCACAAAGTTAGGTTGGTAAGGGATGCTGGTTATGCATCAGATTATACCTTGGGTGATCTTCTGAGATCAAAATCACAGGAGGGAGTAAGAGTGCTTCTCCTTCTTTGGGATGATCCTACATCAAGAAGCATTTTAGGTTATAAAACTGATGGTGTCATGGCAACTCATGATGAGGAAACTAGACGATTTTTCAAGCACTCTTCAGTGCATGTGCTGCTTTGTCCTCGGATTGCTGGAAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACACATCATCAGAAAACAGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAGATTGTAGCATTTGTTGGTGGACTTGATTTATGTGACGGGCGATATGATACCCCCCACCATCCTCTCTTTAGGACATTGCAGACGCTACATAAAGATGACTATCACAACCCTACTTTCACAGGTAATGTTGGTGGTTGTCCACGGGAGCCATGGCATGATTTGCATTCTAGAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCACATGGGATAAAAAAGTTGAAAATTTCATATGATGATGCTTTGCTTAGGCTGGAAAGAATTCCAGATGTTATTGGCATGACTGATCTTCCTTGTCTTGATGATGATCCTGAAGCTTGGCATGTGCAGATATTTCGTTCAATTGATTCAAATTCTGTTAAGGGATTTCCTAAGAATCCAAGAGAAGCAACTGGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTGAAGGCCATTCGTGCTGCACAGCATTACATTTATATAGAGAATCAATATTTCATCGGTTCTTCTTACAATTGGAATCAACACAGAGACCTTGGTGCCAATAATTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATTAAAGCAAATGAGAGGTTCGCAGTGTATATTGTTATACCGATGTGGCCAGAGGGTGTTCCAACAGGCGCTGCCACACAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAGTTTACAAGGCTTTGGTTGAGGCTGGGCTTGAAGCAGCATTCTCTCCACAAGACTACTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCATAAATATGTATGAAAATGTCAGTGTGTCAGGAAATCCTCCCCCAGCAAATAGTCCTCAAGCAGCTAGTCGAAATAACAGACGTTTCATGATCTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGATCTGCAAACATCAACCAACGCTCTATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCCTACCAACCTCATCATACCTGGGCAAGAAAACATTCTAATCCACACGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGAACAATTGATGACTGCTTCCTGCAACCTGAGAGCCTTGAATGTGTGCGAAGGATTAGATCAATGAGTGAAATGAACTGGCAACAATTTTCAGCAAATGAAGTAACAGAGATGAGAGGGCATCTACTAAAATACCCGGTAGAAGTTGATCGAAAGGGAAAAGTTAGACCCCTTCCCGGCTATGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAACCTAACCATTTAA 3294 0.422 MDKYGSSPPYRYPNPYVYPPNPHPPYPPPSPAPDPYAHAPYPYPYFSSHSFNYSYPPPPRLPPSPSHSGPLEYSYPPPHQAPSSAPPTAPSYPYPYHIPPGSHSSPRPSLSHHPSLPHGSSHYYYQQNEAYSSHEDKPGAHMHANSFSGPYWQETPSSTGGEEVSQTSIGSKPSQSSAYPPLDDLMNNVQLSDNQPSAPASPPAPAVQPLMHSMSVPKIQQKKEEFYGYSNNSFSGWGSSYPGQVDSSKLSEFSGSFNESVHSQSLQIVPMQNKGSLRVLLLHGNLDIWVLQAKNLPNMDMFHKTLGDMFGRLPGNVSNKIEGTVNRKITSDPYVSISVSNAVIGRTFVISNSENPIWMQHFYVPVAHHSAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEKVEGTYPILNNNGKPCKQGAVLSLSIQYIPMERLSIYHQGVGAGPEYIGVPGTYFPLRKGGAVTLYQDAHVPDGTLPNVLLDNGTYYVHGKCWHDIFHYISQARRLIYITGWSVWHKVRLVRDAGYASDYTLGDLLRSKSQEGVRVLLLLWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLCPRIAGKRHSWIKQKEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTLHKDDYHNPTFTGNVGGCPREPWHDLHSRIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLRLERIPDVIGMTDLPCLDDDPEAWHVQIFRSIDSNSVKGFPKNPREATGKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWNQHRDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETVYKALVEAGLEAAFSPQDYLNFFCLGNREAINMYENVSVSGNPPPANSPQAASRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKHSNPHGQIHGYRMSLWAEHTGTIDDCFLQPESLECVRRIRSMSEMNWQQFSANEVTEMRGHLLKYPVEVDRKGKVRPLPGYEEFPDVGGKIVGSFLAMKENLTI. 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01115 1097 Pfam Phospholipase D C terminal 1017 1087 IPR024632 -
Seca2g01115 1097 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 609 644 IPR001736 GO:0003824
Seca2g01115 1097 SUPERFAMILY Phospholipase D/nuclease 484 709 - -
Seca2g01115 1097 ProSiteProfiles C2 domain profile. 262 408 IPR000008 -
Seca2g01115 1097 FunFam Phospholipase D delta 485 723 - -
Seca2g01115 1097 SMART C2_3c 285 407 IPR000008 -
Seca2g01115 1097 MobiDBLite consensus disorder prediction 57 208 - -
Seca2g01115 1097 MobiDBLite consensus disorder prediction 57 102 - -
Seca2g01115 1097 FunFam Phospholipase D 756 989 - -
Seca2g01115 1097 Pfam C2 domain 284 410 IPR000008 -
Seca2g01115 1097 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 943 970 IPR001736 GO:0003824
Seca2g01115 1097 PANTHER PHOSPHOLIPASE D 274 1088 IPR015679 -
Seca2g01115 1097 CDD C2_plant_PLD 279 431 - -
Seca2g01115 1097 MobiDBLite consensus disorder prediction 104 133 - -
Seca2g01115 1097 Gene3D Endonuclease Chain A 486 723 - -
Seca2g01115 1097 Gene3D C2 domain 279 423 IPR035892 -
Seca2g01115 1097 Pfam Phospholipase D Active site motif 944 970 IPR001736 GO:0003824
Seca2g01115 1097 Pfam Phospholipase D Active site motif 610 644 IPR001736 GO:0003824
Seca2g01115 1097 FunFam Phospholipase D delta 279 426 - -
Seca2g01115 1097 MobiDBLite consensus disorder prediction 148 197 - -
Seca2g01115 1097 Gene3D Endonuclease Chain A 758 993 - -
Seca2g01115 1097 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 432 IPR035892 -
Seca2g01115 1097 SUPERFAMILY Phospholipase D/nuclease 734 1029 - -
Seca2g01115 1097 SMART pld_4 609 644 IPR001736 GO:0003824
Seca2g01115 1097 SMART pld_4 943 970 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01115 Seca-Chr2 17973199 17982871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01115 64 1097 Phospholipase D Gene Family (Wang group) AT2G42010 69.887 0.0 1489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01115 K01115 - gmx:100791059 1799.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01115 2 17973199 17982871 Seca2g01115 2 17973199 17982871 ECH