Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01110 ATGGAACAAGTTAAAGAAGAAAGTGATGCTGGTATCAAAGGGGAAACCTTGGTTTCAAGTTTTGCAGAGCCTGAAAGCAGTTGCGGTAGAGGAACTCACAAGCCAGTCTCTCTTCAAGGGAGGATGACTGGTCCAACAAGACGATCAACCAAAGGAGGGTGGACAGAGCAGGAGGATAAATGGCTGATTGCTGCTGTGAAAACCTATAATGGAAAAAATTGGAAAAAGATAGCTGAATATGTTCCAACTAGAACAGATGTTCAATGCCTGCACCGTTGGCAGAAGGTTCTCAATCCTGATCTTATTAAAGGACCTTGGACAAAACAGGAAGATGATCTAATACGTGAGCTTGTTATGATAAAAGGGAAAAAGAGCTGGTCTGAGATTTCAAAGTTCTTGCCTGGTCGCATAGGCAAGCAATGTAGAGAAAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACCAAAGAAGAGGAGTTGATTCTTGTCAAGGCTCACCAAATGTATGGGAATAGATGGGCTGAAATAGCCAAGTTTCTGCATGGAAGGAGTGAAAACTCTATCAAGAATCATTGGAACTGCTCTATGAAGAAAAAGGTCAATTTAGATGCTTCTCTGCGTCTTCCTCAGTACAACTTAAATCTTAATTTTGAGGAAGGTAAAATGTCTATTGTCAAACAAAGTTCTGAGGAGAAAGAGAAAGTGAACCTGGACCAAAGATCAAAGTCCAATTTGGGTATTGGAATTATATATGCAAGAGAAAACCATGCACAATCAATGAATTCTGAAACTAGTATACATGTCAGAAATGAAGCTGGTTGTTTCACAAAACCACAATCTACATCTGCCCTGAATCAAACAAGCAATGAATCATGTAAAGCTGCTTCCCCAGTGAGATTTGAGGCTAATGTCAATAGGGGAAGTATTGAACCTCTTCAAAACAAGGACAACACATGTGTTAGTTCATTGTGCTACAAGCCCCTTCAGCTTAAGGATTTGGACATTCTTTTGGGAACTGGTAGAAAACCAAGCACTGACAATTATCTACAGAAGAATTCAAATCCTAATGCCCTTTATATTACCCCACCAAACTATACCAAAAGAATGTTTGATGATTCTCCAAGTCCAGCAGATATATTGAGGTCTGCTGCAAGGAGTTTTAAGGACACCCCATCTATCATAAGAAAAGAAAGGACTAAGTTGTCCAAGAAAAATACAAGTAGCATTCAATTTTCAAAAGGGGATGTCAGGTTTAATTGCACCACGAGCCCTCGGAGACTGGATTTTTCTCCATGTGAAAAAAGTTGA 1320 0.3962 MEQVKEESDAGIKGETLVSSFAEPESSCGRGTHKPVSLQGRMTGPTRRSTKGGWTEQEDKWLIAAVKTYNGKNWKKIAEYVPTRTDVQCLHRWQKVLNPDLIKGPWTKQEDDLIRELVMIKGKKSWSEISKFLPGRIGKQCRERWHNHLNPDIKRTAWTKEEELILVKAHQMYGNRWAEIAKFLHGRSENSIKNHWNCSMKKKVNLDASLRLPQYNLNLNFEEGKMSIVKQSSEEKEKVNLDQRSKSNLGIGIIYARENHAQSMNSETSIHVRNEAGCFTKPQSTSALNQTSNESCKAASPVRFEANVNRGSIEPLQNKDNTCVSSLCYKPLQLKDLDILLGTGRKPSTDNYLQKNSNPNALYITPPNYTKRMFDDSPSPADILRSAARSFKDTPSIIRKERTKLSKKNTSSIQFSKGDVRFNCTTSPRRLDFSPCEKS. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01110 439 ProSiteProfiles Myb-like domain profile. 98 149 IPR001005 -
Seca2g01110 439 MobiDBLite consensus disorder prediction 1 54 - -
Seca2g01110 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 97 IPR017930 -
Seca2g01110 439 CDD SANT 157 197 IPR001005 -
Seca2g01110 439 SUPERFAMILY Homeodomain-like 52 113 IPR009057 -
Seca2g01110 439 SMART sant 50 99 IPR001005 -
Seca2g01110 439 SMART sant 154 202 IPR001005 -
Seca2g01110 439 SMART sant 102 151 IPR001005 -
Seca2g01110 439 PANTHER MYB PROTEIN-RELATED 51 136 - -
Seca2g01110 439 Gene3D - 156 247 - -
Seca2g01110 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 153 IPR017930 -
Seca2g01110 439 Pfam Myb-like DNA-binding domain 155 197 IPR001005 -
Seca2g01110 439 Pfam Myb-like DNA-binding domain 51 97 IPR001005 -
Seca2g01110 439 Pfam Myb-like DNA-binding domain 103 149 IPR001005 -
Seca2g01110 439 SUPERFAMILY Homeodomain-like 100 196 IPR009057 -
Seca2g01110 439 Gene3D - 102 154 - -
Seca2g01110 439 CDD SANT 105 149 IPR001005 -
Seca2g01110 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Seca2g01110 439 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Seca2g01110 439 Gene3D - 50 100 - -
Seca2g01110 439 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Seca2g01110 439 CDD SANT 54 97 IPR001005 -
Seca2g01110 439 FunFam Transcriptional activator Myb isoform A 103 154 - -
Seca2g01110 439 FunFam Transcriptional activator Myb isoform A 50 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01110 Seca-Chr2 17942497 17947510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01110 103 208 MYB Transcription Factor Family AT5G11510 33.645 2.59e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g01110 Myb_DNA-binding 1.7e-16 CL0123