Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01096 ATGCACACTCCAAACCCACCCCCTTCTTCTTCACCCAATTCCGCCGCCGTTGACACCGAGCCGTTCCTCCTCCGTAGCCGGCGCTTCCTCCGCAGCACACCGCCGCCGCCGCTCCGGACGGCAGCCCGGTTCTTCCGGCGGGCGAGTGGGCAGCGCATGATGCTGCGGGAGCCGTCGGTGAGGGTCCGGGAGGCGGCGGCGGCGGAGGTGGAGGAGCGGCAGAGGGAGTGGGCTTACTCGAAGCCAGTGGTGGCACTGGACGTGGCGTGGAACTTGGCGTTCCTTTTGATTGGAGCCACCGTGTTGGGTTTGAGCAACAAGGAGGAGCCATGTGTGCCCCTAAGGGTGTGGATTGTAGGGTACTTGTTGCAGGGTGTGTTTCACTCTCTATGTGTGGTTGTGGAATTCAGAAGGAGGAGGAGGCTATTTGGGGGTTCTTCTTCTTCCGTGTTGGACCAGAATGGGGGGTGGGAAAGTGCTCCACAACAATGGAGTTTCAGTTCTGAGAGTGATGATGCTTCAGATCACTTTCTTGAGTCTGATGAAAACAGCATCACAAAACACATAGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATCATTGGGTTCTACTGGGTAACTGCTGGTGGCCAGAGTTTGCCAAGGGATTCACCTCAGCTTTACTGGCTCTGTATTACATTTCTTGCTTTCGACGTTGTCATTGTACTGATCTGTGTTGCTGTTGCATGTCTTATTGGCATTGCCGTTTGCTGTTGTCTTCCATGCATACTTGCTATTTTATATGTAGTGGCAGATCAGAAAATGGAAGCAGAGCATATGATTTATATGATAGAGTATCATCTCTCCTACATCATTGGAGGAAGTGAAAACCAGTTCAATGTCAATAGGGCTGAGGTGGAGGGATGTTTTGAATGTGATAACAACCTTTGTGGGACTCACTCACAAGTCACAACCCAAATGCTGTCCTTGTATCTGCAGCAAAAAGAAGGAGCAACCAAGGAAGAGATCGACCAGTTGCCAAAATATAAGTTCAATATAATAAAAGAATTCAAGAAAGAAGGTGATATCCAAGAATCATCCAGAGGAATAATGAGGGAATGTGACAGTGGTACAGCTGCTGAGCATGTTATTGCTTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGATGGTGTTGAACTTAGAGAACTTCCTTGCAACCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAGTTCAACATTTTGGGGACTGATAACCACCATCAAGTTTGA 1320 0.4879 MHTPNPPPSSSPNSAAVDTEPFLLRSRRFLRSTPPPPLRTAARFFRRASGQRMMLREPSVRVREAAAAEVEERQREWAYSKPVVALDVAWNLAFLLIGATVLGLSNKEEPCVPLRVWIVGYLLQGVFHSLCVVVEFRRRRRLFGGSSSSVLDQNGGWESAPQQWSFSSESDDASDHFLESDENSITKHIESANTMLSFIWWIIGFYWVTAGGQSLPRDSPQLYWLCITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILYVVADQKMEAEHMIYMIEYHLSYIIGGSENQFNVNRAEVEGCFECDNNLCGTHSQVTTQMLSLYLQQKEGATKEEIDQLPKYKFNIIKEFKKEGDIQESSRGIMRECDSGTAAEHVIALEDAECCICLSAYDDGVELRELPCNHHFHCTCIDKWLLINATCPLCKFNILGTDNHHQV. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01096 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 432 IPR013083 -
Seca2g01096 439 ProSiteProfiles Zinc finger RING-type profile. 386 427 IPR001841 -
Seca2g01096 439 PANTHER TARGET OF ERK KINASE MPK-1 48 432 - -
Seca2g01096 439 SUPERFAMILY RING/U-box 376 431 - -
Seca2g01096 439 SMART ring_2 386 426 IPR001841 -
Seca2g01096 439 Pfam Ring finger domain 385 427 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01096 Seca-Chr2 17756800 17762228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01096 330 437 C3H Transcription Factor Family AT1G68070 49.550 6.67e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01096 - - nnu:104596147 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01096 2 17756800 17762228 Seca2g01096 2 17756800 17762228 ECH