Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01093 ATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCCATTTCATCAGATCCTGGAGGGGATTCTACCACAAAAAGAGCTAAGTTTGATCAAGAGACTGAAGGAAAGGTCAATGTGGAAACAAATCCTGTTGAGAGAGGCAGCAAAGATCAGGAGCAGCATGTAGATGCATCAAAAGAAACTAGTGTTGGCAGTGGCACAGTGGCTAGAATTGATAAGTCAGGTTATGACCAGCTTCCAAAAGAATTACATGAAATGAAAATTAAAGACGATAAAGGCAAAAACAACAGTGAAAAGGATATAGAAGCAACTGTTGTGAATGGCAATGGGACAGAAACTGGTCAAATAATTACTACTGCTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCGGAACGTGTGGTTGGTACTGGTTCTTTTGGTGTTGTTTATCAGGCGAAGTGCCTTGAAACTGGTGAATCAGTTGCTATAAAGAAAGTGTTGCAGGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCATGCTTGACCATACTAATGTTCTTAAACTAAAGCACTGTTTCTATTCAACGGCCGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGGATGCACCAACATATGCCTATCCTTTATATACAACTGTATACATACCAGATATGCCGTGGTTTAAATTATATGCATCATGTGGTTGGAGTCTGTCATCGTGACATCAAACCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGGGAACCCAACATATCATACATATGCTCACGGTATTATCGAGCTCCGGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATGTTTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCAATGTTTCCCGGAGAGAGTGGGGTTGATCAGTTGGTAGAGATCATCAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACAGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCACAAGGTTTTTCACAAAAGGATGCCTCCTGAAGCAGTGGATCTTGTATCAAGGATGCTTCAGTATTCACCTAATCTACGTTGCACTGCTTTGGAAGCATGTGCACACCCTTTCTTTGATGATCTGCGGGACCCAAATACAAGCTTGCCGAATGGGCGAGCAATGCCTCCTTTGTTTGATTTCACAGCTCAAGAACTGGCAGGCGCGCCTGATGAGTTGCGCCGACGACTCATTCCTGATCATGCAAGGCATTGA 1401 0.4254 MNMMRRLKSIASGRTSISSDPGGDSTTKRAKFDQETEGKVNVETNPVERGSKDQEQHVDASKETSVGSGTVARIDKSGYDQLPKELHEMKIKDDKGKNNSEKDIEATVVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCLETGESVAIKKVLQDKRYKNRELQVMRMLDHTNVLKLKHCFYSTAEKDELYLNLVLEYVPETVYRVSKHYVRMHQHMPILYIQLYTYQICRGLNYMHHVVGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLRDPNTSLPNGRAMPPLFDFTAQELAGAPDELRRRLIPDHARH. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01093 466 MobiDBLite consensus disorder prediction 46 60 - -
Seca2g01093 466 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01093 466 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01093 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca2g01093 466 MobiDBLite consensus disorder prediction 9 25 - -
Seca2g01093 466 FunFam Glycogen synthase kinase-3 beta 121 216 - -
Seca2g01093 466 SUPERFAMILY Protein kinase-like (PK-like) 136 446 IPR011009 -
Seca2g01093 466 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01093 466 CDD STKc_GSK3 132 424 IPR039192 -
Seca2g01093 466 MobiDBLite consensus disorder prediction 1 79 - -
Seca2g01093 466 Gene3D Phosphorylase Kinase; domain 1 122 216 - -
Seca2g01093 466 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 102 465 - -
Seca2g01093 466 Gene3D Transferase(Phosphotransferase) domain 1 217 465 - -
Seca2g01093 466 FunFam Shaggy-related protein kinase kappa 217 465 - -
Seca2g01093 466 ProSitePatterns Protein kinases ATP-binding region signature. 143 167 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01093 Seca-Chr2 17648236 17653804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01093 143 424 Core Cell Cycle Gene Families AT1G76540 36.271 7.28e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca2g01093 Pkinase 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01093 K00924 - gmx:100786458 860.907