Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01091 ATGAGTTTTGGAGGGTTTCTTGACAACAAGCAAGGTGTTGGAGGTGCTAGCATCGTAGCAGATATTCCATACAACAACAACAATATCAACAATAGCATCAGCAACGATAGAATGCCCTCTAGTGCAATCTCACATTTAGCCACTCCTACTTTAGCAAAATCCATGTTCAACTCACCTGGCCTTTCTCTGGCACTTCAAACAAATATAGATGGACAAGGGGATGTGAACAGATTAATGCCAGAGAATTTTGAGCAAAATGGTTTGAGAAGGAACAGAGAAGAAGAGCATGAAAGCAGATCTGGTAGTGATAATATGGATGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCAAGAAAAAAGCGTTATCACCGACACACTCCTCAGCAAATACAAGAACTTGAAGCGCTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGGCTTGAACTGAGTAAAAGGCTATGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAACGCCATGAGAACACACTGCTTAGGCAAGAGAATGATAAACTCAGAGCTGAGAACATGTCTATGAGGGAAGCTATAAGGAATCCCATGTGTTCAAATTGTGGAGGTCCAGCTATAATTGGTGAAATTTCACTTGAAGAACAACATCTTAGGATTGAGAACGCTAGATTGAAAGATGAACTAGACAGAGTTTGTGCACTTGCTGGGAAATTTTTGGGTCGCCCCATTCCTTCATTAACAAGCTCAATTGGCCCTCCATTGCCAAATTCAAGTTTAGAGCTTGGAGTTGGGAGCAATGGTTTTGGTGGATTGAACACTAGTGTCCCTTCAACATTGCCTTTGGGTCCTGATTTTGGGATATCAAGTCCTTTAGGCATGGTGTCACCACCACCTCAAACAAGACCAACAACAACTGGCTTTGACAGATCAGTGGAAAGATCAATGTTTCTAGAGCTAGCTTTATCTGCAATGGATGAGTTAGTTAAGATGGCTCAAACTGGGGAGCCTCTTTGGATCAGAAGTTTAGAAGGGGGAAGAGAAATTCTCAACCAAGAGGAATACACAAGGACAATGACTCCTTGCATTGGTTTGAGACCAAATGGTTTTGTCTCAGAGGCTTCTAGAGAAACTGGTATGGTCATTATTAACAGCTTGGCCCTTGTTGAGACTTTAATGGACTCAGTAAGTCATTCAACTACCAATCCACTTTTCCTCCAACTTCTTTTCCCTTTCAATTAA 1278 0.4194 MSFGGFLDNKQGVGGASIVADIPYNNNNINNSISNDRMPSSAISHLATPTLAKSMFNSPGLSLALQTNIDGQGDVNRLMPENFEQNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSMREAIRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPIPSLTSSIGPPLPNSSLELGVGSNGFGGLNTSVPSTLPLGPDFGISSPLGMVSPPPQTRPTTTGFDRSVERSMFLELALSAMDELVKMAQTGEPLWIRSLEGGREILNQEEYTRTMTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSVSHSTTNPLFLQLLFPFN. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01091 425 Coils Coil 173 205 - -
Seca2g01091 425 Gene3D - 109 195 - -
Seca2g01091 425 Pfam START domain 331 408 IPR002913 GO:0008289
Seca2g01091 425 SUPERFAMILY Homeodomain-like 105 179 IPR009057 -
Seca2g01091 425 MobiDBLite consensus disorder prediction 86 102 - -
Seca2g01091 425 SMART HOX_1 120 183 IPR001356 GO:0003677
Seca2g01091 425 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Seca2g01091 425 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 118 413 IPR042160 -
Seca2g01091 425 MobiDBLite consensus disorder prediction 83 129 - -
Seca2g01091 425 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Seca2g01091 425 FunFam Homeobox-leucine zipper protein HDG1 109 195 - -
Seca2g01091 425 CDD homeodomain 121 179 IPR001356 GO:0003677
Seca2g01091 425 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Seca2g01091 425 ProSiteProfiles START domain profile. 322 406 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01091 Seca-Chr2 17552185 17558764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01091 1 407 Homeobox Transcription Factor Family AT4G00730 58.195 1.37e-153 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca2g01091 START 9.8e-07 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01091 K09338 - gmx:100787537 661.373