Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01082 ATGGCAGAATCATATAGTTCTTGTGCTATCAAGAATGTGTCTCCCAATTCTAAATCTAACAAAGTGAGCAGCATGAAAAGGTTCATTGGGGTGAGGCAAAGGCCTTCAGGAAGGTGGGTAGCAGAGATCAAAGACTCTTCTCAACATGTGAGGTTATGGCTTGGAACCTATGACACACCAGAAGAGGCTGCAAGAGCTTATGATGAAGCAGCTAGAGCTCTACGTGGGGAAAATGCAAGAACCAACTTTGCATCATCATTGAACCAAACCACAATTACTAATTCACTTTCCAATGAAGCAAAACATGGGTTGAGTTTTGCTTCCTTGAAAGCCAAGTTAAGCAAGAATCTTCAGAGCATCATGGCCAAGACTAGTAGTGATTGCAAGTCATCAAAGAGTAGAGTGAGTGACCATTTTACCTTTGCTACCATATTCCACCATAGGAGTACTTATCACCACCAAATCCCTTCAGTAGATGTTGAGAATTTGGTGCAGCCTAGCATTGTTGTGCCCCCTGTTGAACCTGACCCTGCTTCTTGGGAAACTAATTCTAGTGTTTCTGAGTGTTGTAGTTCTACTTCTGAGTGGATTGGGTTCAAGCAACCTGTAGGAGGAAGGGATTTAAGGGTTGGTGATGAAGGGTCTTTAGACCAATTGATGGGGTGGGTAGATAGCTCAGATAATGGAGGAAGTGAGGGATCAAGGAGCAAGAGGTTCAAGGTCTCTCCTTCTGTGCTTGTGCCTCCAACTTTCACTGATTGTGGTTCTCCATTTAGTTGTGGCTCTCCTTATCATGGTTATGGATCCCCTTATAGTGGTTGTGAATCTCCATATAATGGTTATGGCACTCAATTTAATAGTAGTGGAAATTAA 873 0.4284 MAESYSSCAIKNVSPNSKSNKVSSMKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFASSLNQTTITNSLSNEAKHGLSFASLKAKLSKNLQSIMAKTSSDCKSSKSRVSDHFTFATIFHHRSTYHHQIPSVDVENLVQPSIVVPPVEPDPASWETNSSVSECCSSTSEWIGFKQPVGGRDLRVGDEGSLDQLMGWVDSSDNGGSEGSRSKRFKVSPSVLVPPTFTDCGSPFSCGSPYHGYGSPYSGCESPYNGYGTQFNSSGN. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01082 290 FunFam ethylene-responsive transcription factor RAP2-11 26 85 - -
Seca2g01082 290 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Seca2g01082 290 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Seca2g01082 290 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Seca2g01082 290 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Seca2g01082 290 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Seca2g01082 290 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Seca2g01082 290 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Seca2g01082 290 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Seca2g01082 290 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01082 Seca-Chr2 17352742 17353614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01082 17 85 AP2-EREBP Transcription Factor Family AT5G19790 68.116 2.05e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca2g01082 AP2 8.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01082 K09286 - gmx:100799444 298.901