Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01033 ATGGGAAGGACACCATGTTGTGATAAGAAAGGTTTGAAGAAAGGACCATGGACACCTGAAGAGGATGAGATTCTTTCTAATTATATCAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCAAAGATGACAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTAAGGTGGACGAACTATCTCAGACCTGACATAAAACGTGGTCCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTAGGAAATAGGTGGGCTGCAATTGCCTCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAACTTTTGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCCAAAACCCACAAGCCAATGACCTCATCATCTGGTTACCCCACTCACAAGTCACATATATCTGTTTCCACACGCCACATGACTCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCGTGTGATTCATCACATTTCAACAACAACAACAACAACCCTTCCTCTACCAAAACTGAATCTGACATTTTCCTCCGCATATGGAACTCTGAAGTTGGAGAGGCATTTAGAAATATTATTTGCAAAACCAGTTGCTGTCAGAGTCCCCTTTCTGCAGGATCATCTTCTAACAAATGTGACTCAGTTTCTGCTGTTACAGCAGAGTTGGTAACCAACCCATTAGGATCCTTAAACACAGCAAGCAAAATTGTGAAAGAAGAGTTGGAGTGGAGGAACACCAAATCATGTGGTGAAGATGTGATACATGGGTCTGATTCATCAAGTTCTAATGACTTAGAAGACTCATCTGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCCCTTGTTTGTCAATTGTCCCCTTTAGTTTAG 939 0.4313 MGRTPCCDKKGLKKGPWTPEEDEILSNYIKKNGGHGSWRSLPKMTGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGLDPKTHKPMTSSSGYPTHKSHISVSTRHMTQWESARLEAEARLSCDSSHFNNNNNNPSSTKTESDIFLRIWNSEVGEAFRNIICKTSCCQSPLSAGSSSNKCDSVSAVTAELVTNPLGSLNTASKIVKEELEWRNTKSCGEDVIHGSDSSSSNDLEDSSDTALQLLLDFPINNDMSFLEGNSLVCQLSPLV. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01033 312 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca2g01033 312 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Seca2g01033 312 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca2g01033 312 FunFam MYB transcription factor 70 117 - -
Seca2g01033 312 FunFam Myb transcription factor 11 68 - -
Seca2g01033 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca2g01033 312 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca2g01033 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 251 - -
Seca2g01033 312 Gene3D - 70 141 - -
Seca2g01033 312 CDD SANT 16 62 IPR001005 -
Seca2g01033 312 SMART sant 13 64 IPR001005 -
Seca2g01033 312 SMART sant 67 115 IPR001005 -
Seca2g01033 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca2g01033 312 MobiDBLite consensus disorder prediction 126 141 - -
Seca2g01033 312 CDD SANT 70 113 IPR001005 -
Seca2g01033 312 Gene3D - 11 68 - -
Seca2g01033 312 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca2g01033 312 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01033 Seca-Chr2 16709598 16712444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01033 1 302 MYB Transcription Factor Family AT3G61250 62.215 1.65e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g01033 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01033 K09422 - gmx:100816569 450.284