Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01032 ATGAACAATAGAGCGAGATACCCACCTGGGATCGGGTTAGGGCGAGGTGGTGGTGGTTTGAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACAACAGTATGTGCAGAGGCACATGATGCAACATCAACATCAACATCCACAGCAGTACCAGCAGCATCAACAGAATCAGCAGCAGCAACAACAACAACACCACCACCAACAACAACAACAATGGTTGAGAAGGACCCAGTTGGGTGGTACTGACACCAACGTTGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAAGACTAAATATTCCACCTCCTGATACACGCTATAGGACAGAGGATGTAACAGCAACTAAAGGAAACGAATTTGAGGATTACTTTCTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCCGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTAAAAATTCAAGTCATGGTTACAACAGGTGGTACAAGCCTGAAAGATGATATTATGCGATTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAGAAATTGTTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAGTAGAGCAGCTAATTCAATTTCTTCCTGCAAACCGTCAGATCCTGATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGTAAGTCGTATGTTATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCCATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCTAAGAAAATCACAGAACTTGGATATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGAAATAGAGTTTTTCATGACTTTCGCAATGGTGCCTGCAGGAATCTGGTTTGCACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATCTACACAGGGTTGGTCGTTCAGGAAGATTTGGGCACCTTGGTTTGGCAGTGAATTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAACAAATCCCGCCACACATTGATCAGGCAATATATTGTAGGTGA 1515 0.4112 MNNRARYPPGIGLGRGGGGLNSNPGFQPRPHQQQYVQRHMMQHQHQHPQQYQQHQQNQQQQQQQHHHQQQQQWLRRTQLGGTDTNVVEEVEKTVQSEAVDPSSQDWKARLNIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILRNCSMLVMDEADKLLSPEFQPSVEQLIQFLPANRQILMFSATFPVTVKDFKDRYLRKSYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01032 504 SMART helicmild6 381 462 IPR001650 -
Seca2g01032 504 Gene3D - 89 334 IPR027417 -
Seca2g01032 504 MobiDBLite consensus disorder prediction 25 73 - -
Seca2g01032 504 FunFam ATP-dependent RNA helicase DDX6 335 504 - -
Seca2g01032 504 Pfam Helicase conserved C-terminal domain 356 462 IPR001650 -
Seca2g01032 504 FunFam ATP-dependent RNA helicase DDX6 111 334 - -
Seca2g01032 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Seca2g01032 504 CDD DEADc_DDX6 132 332 - -
Seca2g01032 504 SMART ultradead3 149 345 IPR014001 -
Seca2g01032 504 MobiDBLite consensus disorder prediction 1 73 - -
Seca2g01032 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 484 IPR027417 -
Seca2g01032 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 64 503 - -
Seca2g01032 504 MobiDBLite consensus disorder prediction 95 121 - -
Seca2g01032 504 Gene3D - 335 504 IPR027417 -
Seca2g01032 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Seca2g01032 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Seca2g01032 504 Pfam DEAD/DEAH box helicase 155 319 IPR011545 GO:0003676|GO:0005524
Seca2g01032 504 Coils Coil 51 71 - -
Seca2g01032 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Seca2g01032 504 CDD SF2_C_DEAD 342 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01032 Seca-Chr2 16687395 16692990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01032 130 501 Eukaryotic Initiation Factors Gene Family AT3G19760 37.701 7.72e-93 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01032 K12614 - tcc:18614173 854.744