Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01015 ATGGATCGTGGGGACCATATGGCGTTATCTGGGTCTGCACCTTACTATATGCAACAGAGAGGAATAGCTGGTTCTGGAGCACAACCCGAGTTACATGTTTCACATAGTATTCGTCCACTGTCTAATCCTAATCTACCATTTCAATCCAGCATTGGTGGTGGCACCATTGGATCCACATTACCTTTAGAATCTTCAGCAATTCAATCTCATGGTGTCAATGTGGGTGCTCCTACTGGGGCACCACTTGGGGAGCCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGGCTGCTGATGGAACTGTGTCATTGGCATTGACCCCAACACCATCTACTCATCCTGGAACCATGACATCAGGCCAGAAACGGGGCAGAGGGCGTCCGCCTGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTAGTTCTGCTGGAATGGGATTCACTCCTCACATCATCAATATTGCAACTGGAGAAGACATTGCAACAAAAATTATGGCATTTTCTCAGCTGGGGCCTAGAGCTATATGCGTTTTGTCAGCCAATGGTTCTGTCTCAACTGTCACACTTCGTCAACCTTCATCTTCAGGTGGCACTGTCACATATGAGGGGTCTTTCGAGATTTTGTGCCTGTCAGGCTCTTACTTGCTTACAGAAAGTGGTGGTTCACGCAATCGAACTGGTGGGCTAAGTGTTTCCCTTGCTACTCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGAGGAGTGCTTATTGCATCAGGCCCTGTCCAGGTGATAGTTGGAAGCTTTCAATGGAGTGGATCAAGGACAAAGAACAAGAAAAAGGAAGGCTCAGATGGTGCAGAAGTTGGTGTGGAGTCAGATCATCAAGGAGTTCATAATCCAGTTGCACTGAATAGCATTTCATCAAATCAAAATCTTACTCCAACCTCATCTTTAAGTCCTTGGTCGGTGTCGCGTCCGTTGGATATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA 1026 0.4698 MDRGDHMALSGSAPYYMQQRGIAGSGAQPELHVSHSIRPLSNPNLPFQSSIGGGTIGSTLPLESSAIQSHGVNVGAPTGAPLGEPVKRKRGRPRKYGAADGTVSLALTPTPSTHPGTMTSGQKRGRGRPPGTGKKQQLASLGELMSSSAGMGFTPHIINIATGEDIATKIMAFSQLGPRAICVLSANGSVSTVTLRQPSSSGGTVTYEGSFEILCLSGSYLLTESGGSRNRTGGLSVSLATPDGRVIGGGVGGVLIASGPVQVIVGSFQWSGSRTKNKKKEGSDGAEVGVESDHQGVHNPVALNSISSNQNLTPTSSLSPWSVSRPLDMRNSHVDIDLMRG. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01015 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 269 IPR005175 -
Seca2g01015 341 MobiDBLite consensus disorder prediction 71 138 - -
Seca2g01015 341 MobiDBLite consensus disorder prediction 274 288 - -
Seca2g01015 341 Gene3D - 155 292 - -
Seca2g01015 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 272 - -
Seca2g01015 341 CDD DUF296 154 268 IPR005175 -
Seca2g01015 341 MobiDBLite consensus disorder prediction 298 325 - -
Seca2g01015 341 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Seca2g01015 341 MobiDBLite consensus disorder prediction 105 120 - -
Seca2g01015 341 FunFam AT-hook motif nuclear-localized protein 1-like 155 285 - -
Seca2g01015 341 MobiDBLite consensus disorder prediction 273 325 - -
Seca2g01015 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 316 IPR039605 GO:0003680
Seca2g01015 341 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Seca2g01015 341 SMART AT_hook_2 87 99 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01015 Seca-Chr2 16514585 16519859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01015 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 47.922 2.90e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01015 - - gmx:100814615 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01015 2 16514585 16519859 Seca2g01015 2 16514585 16519859 ECH
Seca4g11279 4 251332142 251339656 Seca2g01015 2 16514585 16519859 PCT