Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01013 ATGGGGATTGAGTGCTCCAGACTATTGCCATGTTGCGTGGATTCACAAGTTAAGGCATCTATTCTTGAAGTTCCAGATACTGAAAATGAGGATAGAATTGAGGCCAATGATGGGCCTGCATTTCGTGAATTTACTTTGGAGCAACTTAATAATGCAACATCTGGTTTTGCTGTTGAGAATATAGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGAAAGATGGAGAATCAAATGAGGATTGCTGTCAAGCGGTTTAATAGAAATGCTTGGCCTGATGCTCGGCAGTTTTTGGAGGAAGCTAGATCCGTTGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAAGGCGATGAGAGGTTGCTTGTGGCCGAATATATGCCCAATGAAACACTAGCAAAACACCTTTTCCATTGGGAAACACAACCAATGAAATGGGCAATGCGACTCAGAGTTGTTCTACATCTTGCAGAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCCCTCTATCATGACCTTAATGCATATAGAGTTTTATTTGATGAGGATGGTAATCCTAGGCTTTCAAGTTTTGGTCTTATGAAGAATAGTAGGGATGGGAAAAGTTATAGCACAAATTTGGCGTTTACCCCTCCAGAATATCTCAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCCCCCAGTCATGCCCTTGATTTGATTCGGGACAGAAATCTTCAGATGCTAACAGATTCTTGTTTGGAAGGACAATTCTCTGATGATGATGGAACAGAGTTGGTGCGCTTGGCATCTCGATGTTTACAGTATGAACCTAGGGAAAGGCCTAATCCAAAGTCATTAGTGGCTGCTTTGGCTCCTCTTCAGAAAGAAACAGAGGTTCCTTCTCAGTTATTGATGGGTATCCCACATAGTGCTACAGTTGCTTCATTGTCCCCACTTGGTGAAGCATGTTCAAGAAAGGACTTGACCGCCATACATGAAGTTCTTGAAAATATTGGCTATAAAGATGATGAAGGAGTAACAAATGAGGTATTTTCACTGATACTGCAGTTATCCTTCCAGATGTGGACTGATCAAATGCAGGACACACTAAATTGTAAGAAAAAAGGGGATGCTGCTTTCCGGCAGAAAGACTTTAGACTAGCAATTGAGTGCTATACACAGTTCATTGATGTTGGAACAATGGTTTCTCCAACTGTGCATGCGCGGCGCAGTTTGTGTTATCTCATCAGTGAGATGCCTCAGGAAGCACTGAGCGATGCAATGCAAGCCCAAGTAATTTCCCCTGTATGGCACATTGCATCTTATCTTCAATCTGTTTCCCTGGCTGGCCTTGGGATGGAGAATGAAGCACAAATTGCACTTATAGAGGGAACAACACTGGAAGCCAAGCGAAATACACCTTCACAAAAGTGA 1494 0.425 MGIECSRLLPCCVDSQVKASILEVPDTENEDRIEANDGPAFREFTLEQLNNATSGFAVENIVSEHGEKAPNVVYKGKMENQMRIAVKRFNRNAWPDARQFLEEARSVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAEALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSQLLMGIPHSATVASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVTNEVFSLILQLSFQMWTDQMQDTLNCKKKGDAAFRQKDFRLAIECYTQFIDVGTMVSPTVHARRSLCYLISEMPQEALSDAMQAQVISPVWHIASYLQSVSLAGLGMENEAQIALIEGTTLEAKRNTPSQK. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01013 497 Gene3D Tetratricopeptide repeat domain 387 497 IPR011990 GO:0005515
Seca2g01013 497 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Seca2g01013 497 SUPERFAMILY TPR-like 388 482 IPR011990 GO:0005515
Seca2g01013 497 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Seca2g01013 497 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 492 IPR045845 GO:0004672|GO:0009742
Seca2g01013 497 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01013 497 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Seca2g01013 497 SUPERFAMILY Protein kinase-like (PK-like) 40 318 IPR011009 -
Seca2g01013 497 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Seca2g01013 497 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Seca2g01013 497 FunFam probable serine/threonine-protein kinase At4g35230 387 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01013 Seca-Chr2 16434500 16442390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01013 29 313 Glycoside Hydrolase AT3G07070 33.227 1.16e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca2g01013 PK_Tyr_Ser-Thr 4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01013 K14500 - gmx:100781311 900.582