Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00996 ATGGCAACTGACATGCAGAGGTCTGTTGGAATGAGTGAGGATGATGAAGAAGAAATGGGAATGGGTGTGAAAGATGAGGATGATGATGATGATGATTATGAGGAAAATGGAGGTGAGCATGGAAATGCTCCAGGGATGGTACAGATTGATGGTGGGAATGGAATAGGAACCGCCACTGGGGACAACAGGTTTCAGCAGCACCAGCAGTTTCAAGAGCAAACAGGCACTCCAGGTGGAGCTACTCGAAGATCTAGGCCGCTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCTATCACTGCAAGGATCTTGGCAGGGCTTCGCAGGCATGGCAACTACAACCTTAGAGTTAGAGCTGACATCAATGATGTCATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGCACTACTTTTCCCTCAAGATCTCAGGGTCAAAGGCCAGCTGGTGGTAATTCTACAGCTGTCACTTCTTCATCTTCCCACGTGCATTCACAACAGACTCCATCTGCTTCCCTCAAGGGAGCTGCTTCTGGCTATAGGAGCCCTTTAGAGCATAATGCATGTCAAGTGAAAGGTGTTTTTATGCCAGCTCCATCTCCTTATGATCTATCCTCAAGTTCGCGGTCTCAAACATCTATGGTGGGGGATGGCGAAACACAAAGAGACAATAATCCTGTGATTGGTGGTTCTATGGATGGTGTTGATGAGAAGCAGATTGTTGACATGCCCCCCAGATTACAGGAGCGTGATTTTGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTACCATTGGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCGGATGGTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGTAAATGTTGATGGTGTTATGGTTGACTGTTGGTGGGGAATAGTGGAGACACATGCTCCGCAAGAGTATAGTTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGTGAGCTTAAGCTTAAGCTGCAGGTTGTGATGTCTTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGTATTCCATTACCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAAGGAAGACACAACCCTGAATGTCTTACCTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGAACTGCATTGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTCATCTCCATGATTGAAGTTGGACTAGGTCCATGTGGAGAACTAAGATACCCATCTTGTCCTGTGAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGGCACTCTATTTGGGCGAGAGGGCCAGATAATGCGGGTACCTATAACTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTACTTGATCATGGAAATCGGGTACTTTCTCTGGCTAAGTTAGCTTTTGAGGGATCCTGTATTGCTGCAAAGGTAAGTTAA 1653 0.4525 MATDMQRSVGMSEDDEEEMGMGVKDEDDDDDDYEENGGEHGNAPGMVQIDGGNGIGTATGDNRFQQHQQFQEQTGTPGGATRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQRPAGGNSTAVTSSSSHVHSQQTPSASLKGAASGYRSPLEHNACQVKGVFMPAPSPYDLSSSSRSQTSMVGDGETQRDNNPVIGGSMDGVDEKQIVDMPPRLQERDFAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVNVDGVMVDCWWGIVETHAPQEYSWNGYKRLFQMVRELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLTWGIDKERVLRGRTALEVYFDFMRSFRVEFDEYFEDGFISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEVRGHSIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLLDHGNRVLSLAKLAFEGSCIAAKVS. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00996 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 436 458 IPR001554 GO:0000272|GO:0016161
Seca2g00996 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 509 528 IPR001554 GO:0000272|GO:0016161
Seca2g00996 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 321 339 IPR001554 GO:0000272|GO:0016161
Seca2g00996 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 314 IPR001554 GO:0000272|GO:0016161
Seca2g00996 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 343 364 IPR001554 GO:0000272|GO:0016161
Seca2g00996 550 MobiDBLite consensus disorder prediction 83 98 - -
Seca2g00996 550 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 212 550 IPR001554 GO:0000272|GO:0016161
Seca2g00996 550 MobiDBLite consensus disorder prediction 58 80 - -
Seca2g00996 550 SUPERFAMILY (Trans)glycosidases 260 550 IPR017853 -
Seca2g00996 550 MobiDBLite consensus disorder prediction 1 98 - -
Seca2g00996 550 MobiDBLite consensus disorder prediction 209 235 - -
Seca2g00996 550 Pfam BES1/BZR1 plant transcription factor, N-terminal 81 222 IPR008540 -
Seca2g00996 550 MobiDBLite consensus disorder prediction 15 36 - -
Seca2g00996 550 Pfam Glycosyl hydrolase family 14 269 549 IPR001554 GO:0000272|GO:0016161
Seca2g00996 550 MobiDBLite consensus disorder prediction 147 187 - -
Seca2g00996 550 MobiDBLite consensus disorder prediction 208 242 - -
Seca2g00996 550 MobiDBLite consensus disorder prediction 147 183 - -
Seca2g00996 550 Gene3D Glycosidases 257 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00996 Seca-Chr2 15995363 16007377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00996 1 549 Glycoside Hydrolase AT2G45880 67.572 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Seca2g00996 Glyco_hydro_14 2e-78 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00996 K01177 - gmx:100805560 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00996 2 15995363 16007377 Seca2g00996 2 15995363 16007377 ECH