Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00984 ATGGAAGCAAACGAAACAAGGGATGAACAAGCTAATGACAGCACTGTCCAAAGGGCTTCTACAGTCCATTACGCGCCTCCAATGCAATTGCACTCCAACTCTAACCCTGACATCCCTGTCACCGACGTGCATGAAGATCCCACTATAGATAGTACTCAACAGCCATTAGTGCCTCCCTTAGAGCCATATGAAGGAATGGAGTTTGCATCAATTGAAGATGCAAAGAACTACTATACAAGGTACGCCAAGAATAGAGGTTTTAGCTTTCGTATGGGTCGTATTACTAAATCAAGAACAAATGGTATGATGATCGGTCAAGAGATCGTTTGTTCAAAGGAGGGATTTCGGCGAAAAAAAGATATGGGAATGGAACATAAAAGCCTTGCACATGATGAAACAAGGGTAGGATGCAAAGCAATGTTATATATAAAGAAAAATGAGGATAGATGGCTTGTTTCTAGATTTGTAAGAGATCATAATCATGAACTATTTTCCCCAAGAAGCTCACAGTTTCTTCGAGTGCATAGAAAGAAAACTCAAGTGCAAAAGAAACTTATTGATGTGCTTGATGATTCTGGTTTGCAGCCTAGTAAAATAACATCTGTCTTGTGTACTGAAAGTGGTGGTATTGATAATGTTGGATTTAGTCAACAAAATGTTATTGATTACTTAAGTGCAAGGAGACAAAAACAATTAGAAAAAGGAGATGCTCAGTTGATGTTATCATATTTTAAGAATTGCCAATTGAAGAATACTGGGTTTTTTTATGCATTTCAAATGGATGCAGAGGGACAGTTAGCAAATTGCTTTTGGGTTGATTCAAGGTCTAGAATAGCATACAAATATTTTGGTGATGTGGTGACTTTTGATCCAACATACTTAACAAATAGATACAAAATGCCTTTTGTTCCATTCACTGGAGTTAATCATCATCAACAATCAATTCTTTTTGGTTGTGCTCTATTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGTTAAGCACTTGGTTAGAAGCAATGGGTGGAGTTTCTCCTAAAACTATTATCACAGATCAAGACGCTGCCATCACTAATGCAGTTGCAAGGGTATTTCCAAAGGTCAATCATCATTATTGCATGTGGCACATTGAGAAAAAGGTACCGGAGTACTTGAACTATATCTATCATGAACACAGTGAGTTTAAAAATCAATTTTACAAGTGCATTCACCAATCTGTTAGTATTGAAGATTTTGAATCTGATTGGGAAGCAATGATAGATAAATATGGGTTGCAGGATAATCAATGGCTAAAGAAAATATACTTTGTTCGAAACAAATGGATTCCTGCTTATGTACGACATAATTTTTGTGCCGGAATGTCTACCACCCAAAGGAGTGAAAGCATGAATAAATTCTTTATGGATTTTTTGAATTCAAGCACTCCATTAAGCAAGTTTGTTACACAATATGAGAGAGCTCTTGATGCACGTTATAACAAGGAAAGGGAGAAGACTTTCAAGACAATGAATTCAAAACCATTTTTGCGAACATTATATCCCATGGAAGAAGAAGCTTCAAAAACTTATACAAGAAAATTGTTTAGGATATTTCAAGATGAATTGGTTGGCTCTCAATTGTTTACTGCAGAGAAAGTTGGATTTTCCACTGAAGTGTCCACATACAAGGTTCATGAAATTTTAAAAGAGAAACCTAACTATTATGTGGATTTTCATGTTATTTCAAAAGAAGCAAGTTGTGGATGTCACATGTTTGAATTTTTGGGCATTCTTTGTAGACATGTATTAGCTATATTCATAAAGAAAAAGGTCTATTCTCTCCCTTCAAGGTATATTCTATGTCGATGGACCATTAATGCTAAGAAAGAGAAAGTTAAAGGATTGGCAAGTGATGAATTCCAAGAAGGCGACAACAAAGCTTCTAGTACATTATTGTTTAATAGTGTTATGGTTCAATCTCTTGAACTATCTGAAAGAGCTTCACGGTCAGAAAAGCATCATGATGTTGCAATTCAAGGTTTACAAAAGTTAATTGAAGAGGTTGATCTACTAGAAGTTGAAGAGTCAAAGGAAGAGCATGGTAATTCAACAACTCAAGTTATGCCGAAAGTCTCCAACAATGCTATAACTTTGCGTGATCCTCCACTTGTGGCAACTAAAGGGCGTCCACGAACTTTGTGA 2181 0.3618 MEANETRDEQANDSTVQRASTVHYAPPMQLHSNSNPDIPVTDVHEDPTIDSTQQPLVPPLEPYEGMEFASIEDAKNYYTRYAKNRGFSFRMGRITKSRTNGMMIGQEIVCSKEGFRRKKDMGMEHKSLAHDETRVGCKAMLYIKKNEDRWLVSRFVRDHNHELFSPRSSQFLRVHRKKTQVQKKLIDVLDDSGLQPSKITSVLCTESGGIDNVGFSQQNVIDYLSARRQKQLEKGDAQLMLSYFKNCQLKNTGFFYAFQMDAEGQLANCFWVDSRSRIAYKYFGDVVTFDPTYLTNRYKMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLSTWLEAMGGVSPKTIITDQDAAITNAVARVFPKVNHHYCMWHIEKKVPEYLNYIYHEHSEFKNQFYKCIHQSVSIEDFESDWEAMIDKYGLQDNQWLKKIYFVRNKWIPAYVRHNFCAGMSTTQRSESMNKFFMDFLNSSTPLSKFVTQYERALDARYNKEREKTFKTMNSKPFLRTLYPMEEEASKTYTRKLFRIFQDELVGSQLFTAEKVGFSTEVSTYKVHEILKEKPNYYVDFHVISKEASCGCHMFEFLGILCRHVLAIFIKKKVYSLPSRYILCRWTINAKKEKVKGLASDEFQEGDNKASSTLLFNSVMVQSLELSERASRSEKHHDVAIQGLQKLIEEVDLLEVEESKEEHGNSTTQVMPKVSNNAITLRDPPLVATKGRPRTL. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00984 726 Pfam MULE transposase domain 286 380 IPR018289 -
Seca2g00984 726 ProSiteProfiles Zinc finger SWIM-type profile. 567 603 IPR007527 GO:0008270
Seca2g00984 726 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g00984 726 Pfam FAR1 DNA-binding domain 76 164 IPR004330 -
Seca2g00984 726 SMART 26again6 578 605 IPR006564 GO:0008270
Seca2g00984 726 MobiDBLite consensus disorder prediction 26 61 - -
Seca2g00984 726 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 681 IPR031052 GO:0006355
Seca2g00984 726 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00984 Seca-Chr2 15868553 15871075 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g00984 MULE 4.5e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00984 - - tpra:123904109 1051.2