Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00959 ATGTTGGGTGATAGGAAACCTCTGGATTTGTATAAGCTCTTCACGGTGGTGAAGGAGAAAGGTGGTTATGATGTTGTTTGTAAGAACAGTTTATGGGATTTGGTGGGAGAAGAATATGGGTTGGGTGTGAAGGATGGTTCCTCTGTGGAACTGGTTTACAGTAAGTACTTGAGTACTCTAGAGACATGGCTGAAGAATGTTGCTGACAGTAAGATCCCTGAGTGTGATTTAGTGGATGATAGAGTTAAATTTGGCAAGCGTTTGATGGAGGTGCAAGCTGAATTCATGTTGGATGATTGTGCTGAGGATTGTGCTGAGGAAGAGGTGGGGGAGAATGTATATAACTACCCAGATGGGAGGAAGTTGTGTGGTACTACTAGAGTTAAGGGCATGAAACCAGAGTTGAAAGGGGCTAAACTTGAGAGAGTGTATGACTATCTAGATGGGAGGAAGTTGTGTGGTAATAATAGAGTGAAAGGCATGAATCCAGAGTCTAATGGGGCCAAGAAAGTTCAGAATGGAGGACTTGTTGATTTTAATAAGAAGGACCATAGGATGAATGAATCTAGTCTCAAAAACTTGTGCAACCATAATGCTGCAATGGAAAAAATGGAAGAGTTTGATGGAGGCAAAAAATTAGTAGTGGACGTATCTGGTACAGTAAACAACATGCCTGAAATATCAGATGGAAGCAAGAGGTGTGGAAATGAAGTTGATAATTATGATGGTGTTGTGATGTTGGATCCATCCAGTATTAATAAAGAGGATTTTGGTCGTAAGAGGAAGAGAGGGTCTATGTCAGAAATGCTAAACTGGGTTACTAGCATTGCAAAGAATCCTTGTGATCCTTCAGTTGGTTCATTGCCTGAAAAGTCAAAGTGGAAGTCTTACAGTAATCAAGAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCTTTCTGAAAAAAGGTTTTGAATCAAGCAGTGAACAACTTAGGTTGCAGGGTCAGAAGATGCATCCTTCCATGTATGATGATCACCTTGGGGCAACTTACAATCTTAGAGACAGGTTCAAATGTGATAAGAGGCATTTAGTTAGAAAATCTACATCTGATGGAGTCTCTTCAGATTCATCAGGAGGAACACAGAGAGGTTTAGGGAGAACCCCAAGTCCTCATGCTGAAGATTGTGCTAAGAAAAAGTTACTTGACTCCTGTACTGCACACTCAAGTCTTGATGGATGTAGCACAGTGCACATTCCTCTGGGGCCAAACCATCAAGCTGAAGTGCCTGAGTGGACTGGCATGACTTATGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCAACAAAATCTGTAAATTCCAAACTTATTGAAAGGGACCCCATTGGAAAGGGAAGACAAGATTCATGTGGTTGTCAAGTAAAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTACTGAAAAAAGGGCTAAAGTTAAGTTGGAATTGGGTACGGCTTTCTACCTGTGGAATTTACATAAGGTAGGTGAAGACGTTAGGCGGTTGTGGACAAAGCAAGATGAGAAGAAATTCCAAGATGTGGTGAAATCAAACCCTCCTTCACTTGATAGGTGTTTCTGGGATCATATTTTTAAAACATTTCCTATGAAGAGCAGGGAAAATTTAGTCAGCTACTACTTCAATGTCTTTCTTTTGCAGCGCCGAGGATACCAGAATAGGCATACTCAAGATAACATTGACAGTGATGATGATGAATCAGAATATGGACCATTGAGGAATGTTTTTGGACATCAAACACATAAATCACGCAGCTTCACCTTATTATCCCCTAAGAAGCCACAGACAAAGGGAAGATAG 1848 0.4118 MLGDRKPLDLYKLFTVVKEKGGYDVVCKNSLWDLVGEEYGLGVKDGSSVELVYSKYLSTLETWLKNVADSKIPECDLVDDRVKFGKRLMEVQAEFMLDDCAEDCAEEEVGENVYNYPDGRKLCGTTRVKGMKPELKGAKLERVYDYLDGRKLCGNNRVKGMNPESNGAKKVQNGGLVDFNKKDHRMNESSLKNLCNHNAAMEKMEEFDGGKKLVVDVSGTVNNMPEISDGSKRCGNEVDNYDGVVMLDPSSINKEDFGRKRKRGSMSEMLNWVTSIAKNPCDPSVGSLPEKSKWKSYSNQEIWKQVLLFREAVFLKKGFESSSEQLRLQGQKMHPSMYDDHLGATYNLRDRFKCDKRHLVRKSTSDGVSSDSSGGTQRGLGRTPSPHAEDCAKKKLLDSCTAHSSLDGCSTVHIPLGPNHQAEVPEWTGMTYESDSKWLGTQIWPTKSVNSKLIERDPIGKGRQDSCGCQVKGSVECVRFHITEKRAKVKLELGTAFYLWNLHKVGEDVRRLWTKQDEKKFQDVVKSNPPSLDRCFWDHIFKTFPMKSRENLVSYYFNVFLLQRRGYQNRHTQDNIDSDDDESEYGPLRNVFGHQTHKSRSFTLLSPKKPQTKGR. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00959 615 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Seca2g00959 615 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Seca2g00959 615 MobiDBLite consensus disorder prediction 365 380 - -
Seca2g00959 615 CDD ARID 4 61 - -
Seca2g00959 615 SMART ELM2_2 414 464 IPR000949 -
Seca2g00959 615 MobiDBLite consensus disorder prediction 571 587 - -
Seca2g00959 615 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 610 - -
Seca2g00959 615 MobiDBLite consensus disorder prediction 571 615 - -
Seca2g00959 615 MobiDBLite consensus disorder prediction 363 388 - -
Seca2g00959 615 MobiDBLite consensus disorder prediction 594 615 - -
Seca2g00959 615 Gene3D - 2 74 IPR036431 GO:0003677
Seca2g00959 615 SMART bright_3 1 66 IPR001606 GO:0003677
Seca2g00959 615 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00959 Seca-Chr2 15520467 15526749 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca2g00959 ARID 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00959 - - gmx:100780550 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11320 4 251737537 251742420 Seca2g00959 2 15520467 15526749 PCT