Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00956 ATGGGAGGTTGCTGTTGTTCTGCAAAAAAACCTCATCAGCAAGGAACACCAGTGTATTACTATTACCCACCAACTTCTGAAGAGAGTGAGTCTTTAACCGCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGATGCATCCATACCTAATACTTTCCATCCCCCTCCTGTGCCTTTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACCGATTCTGAGTCTGGCAGAGAAACAGCTAGTGTTAGTAGTTATGAAACTTCAATTACACGTGAAGATATTGAAGAATCCGATTGTAAAGCTCAAGCAAAATCTGCACCTATATCTCCAAAGAAGGAAGCACTATCTAAAGTAAATGAAACTCAAGTATTAGTGATAGAAGAGGAGGATGTCTGCCCAATTTGTCTTGAAGAATACGATGATGAGAATCCTAAAAATCTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGTTTGGGTTTTGTATTAA 564 0.3989 MGGCCCSAKKPHQQGTPVYYYYPPTSEESESLTANDGTNASLNAGFLVGLNLDASIPNTFHPPPVPLPYDMVLGGSASTDSESGRETASVSSYETSITREDIEESDCKAQAKSAPISPKKEALSKVNETQVLVIEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPICDQVWVLY. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00956 187 SMART ring_2 140 180 IPR001841 -
Seca2g00956 187 Pfam Ring finger domain 139 180 IPR001841 -
Seca2g00956 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 185 IPR013083 -
Seca2g00956 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 185 - -
Seca2g00956 187 MobiDBLite consensus disorder prediction 74 96 - -
Seca2g00956 187 SUPERFAMILY RING/U-box 133 186 - -
Seca2g00956 187 CDD RING-H2_AIRP1-like 136 183 - -
Seca2g00956 187 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Seca2g00956 187 MobiDBLite consensus disorder prediction 76 96 - -
Seca2g00956 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00956 Seca-Chr2 15433372 15436905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00956 1 186 C3H Transcription Factor Family AT4G00335 53.763 3.74e-65 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00956 - - gmx:100812687 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11322 4 251768748 251773433 Seca2g00956 2 15433372 15436905 PCT