Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00953 ATGGGATTCCCCGTAGGGTACCCTGAGGTTTTGGTCCCAAACGTGTTCCTCTACCTTCTCTCCTTCCTCGCCTTTCTCCGCTCCCTCGTCTTTTCCCTCTTCCACCTCCTCCACCTCTCTGACCTCCTCGACACCGACGTCATCGCCGTCTCCGGCGCCGCCTCCTCGTTGGAATCTCACCCCCGAGTCCCCACTCTCTCGGCGCTCCTAATCCGCGAATACCTCCCCGTCGTCAAGTTCGGCGACCTCGCCGGAGCTTCGTCGCCGGCGGAGGCAGGGTGCGCGGTGTGTCTGAGCGAGTTCGATGAGGAGGAAGAAATCAGGTGTATGGCGAACTGCAAGCACTTTTTCCACAGGGCGTGTGTGGACCGTTGGATGGATCACGATCAGAAAACGTGTCCACTTTGTAGGACCCACTTTGTACCATATGATATGATGGACGATTATAATCAACGCCTTTGGGTTGCTTCTGGTGTTTCTCAGATTTATCAACATGACTACACTGATATTGCTTCCTTCTGA 522 0.5517 MGFPVGYPEVLVPNVFLYLLSFLAFLRSLVFSLFHLLHLSDLLDTDVIAVSGAASSLESHPRVPTLSALLIREYLPVVKFGDLAGASSPAEAGCAVCLSEFDEEEEIRCMANCKHFFHRACVDRWMDHDQKTCPLCRTHFVPYDMMDDYNQRLWVASGVSQIYQHDYTDIASF. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00953 173 SMART ring_2 94 136 IPR001841 -
Seca2g00953 173 SUPERFAMILY RING/U-box 93 144 - -
Seca2g00953 173 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Seca2g00953 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 147 - -
Seca2g00953 173 Pfam Ring finger domain 94 137 IPR001841 -
Seca2g00953 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00953 Seca-Chr2 15368471 15368992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00953 1 159 C3H Transcription Factor Family AT1G63840 44.444 6.83e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00953 K16281 - gmx:100813224 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11336 4 251934342 251934863 Seca2g00953 2 15368471 15368992 PCT