Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00949 ATGGCACTGATCTCTTCTTCCTCCAGAGGAGTAAACCCACTGTTATGGACCTACCATGTGTTTTTGAGTTTTAGGGGAGAAGACACTCGCAGAGGATTCACTGACCATCTGTGTGCTTCGCTGGAAAGAAAAGGAATCACAACTTTCAAGGATGACAAAGACCTTGAGAAAGGACAAGCCATTTCAAAAGAGCTCCTTAAAGCAATTGAAGAATCTATGTTTGCAATCATCATCCTCTCACCAAACTATGCTTCCTCCACTTGGTGTTTGGATGAGATCCAAAAGATTGTTGAGTGCAAAAACAACCAGGCTCTAGAACTTATGCCGGTCTTCTATGGTGTGGACCCCTCTGATGTGAGGCATCAAAGAGGAAGCCTGGAGGAAGCTTTCAAAAATCATGAAGAGAATTTCGGACAAGACAGTGACAAGGTTAAAAAATGGAGACATGCGTTAACACAAGCCTCAAGTTATTCTGGTTGGGACTCCAAGGATCGACATGAGGCAGAGCTTGTGGAAAGCATTGTTCAACACATACATAAAAAGCTTATTCCAAAATTGCCATATTGCACAGAAAACATTGTTGGGATTGCTTCAAGGGTGAATGAAGTGAACTGGATCATGGGTATGCGGTTGAATGATGTTCGCTTTATAGGCGTATGGGGCATGGGTGGCATAGGTAAGACAACTATTGCTAGAGCTGTCTATGAAGCAATCAAAGTCAATTTTAAAGTAACTTGCTTTGTTGCGAGCATTAGAGAGAGAGATGAGACAAATGGTTTGGTTCAAGTACAAAGAGATCTTCTTTCTTGTCTAAATATAAATAGCTGTGATGTTCATGATTTATATGATGGGAAAAAGACAATACAAAACTCTTTATGCAACAAAAAGGTTCTTATTGTTCTCGATGATGTAAGCGAAGCAAAGCAATTAGAGAATTTGGCTGGGAATCAAGATTGGTTTGGTCCAGGAAGCAGGGTAATAATCACAACTAGAGATATGCACCTGCTAAGGATAAATGGAGTGCATAAAACTTACAAGGTTGGAGGTTTAGTCCAAAATGAAGCTCTTCATCTCTTTTGCTTGAAAGCCTTTAAACAAGATCAACCTCAAAATGGGTATTTGGATTTGTCCAAAGAAGTGGTAGAATATACTGGAGGTCTTCCATTGGCACTAGAAGTATTGGGTTCTTATCTTAATGGAAGAACCATTGATGTTTGGCACAGTGCTTTGAAACAAATAAGAAGGTTTCCTCTCTCCAAAATTCAAGATACACTGAACATAAGTTATGAAGGTTTAAATCCTATGGAGAAGGATCTGTTTCTAGATATTACGTGTTTCTTCAAAGGAATGCAAAAAGATAAAGTAATTAACATGGTAGAAAATTGTGGGAATTGTGCCAGAATAGGAATTGAAGTTTTGATTGAAAGATCTTTGATAACTGTAAATAAGTGGGGTGAGTTGGAAATGCATGATTTACTTCAAGAAATGGGCAGGAATATTGTATTTCAAGAATCTGCAAACAATCCTGGCCAACAAAGCAGGTTGTGGTCTCAAGAGGATATTGATCATGTATTGACAAAAAGCAAGGGAACTAAAGCAATTCAGAGTATAGTTTTGAACCCAACTCAACAATATGAAGCACACTGGAGCCCTAAAGCCTTCTCCGAGACAACTGAGCTAAAATTTCTCAAGTTAAGTGATGTGCAACTTCATTCTGACCTGAACTGCCTTCCTAGTTCTCTAAAAGTTCTTCACTGGAGTGGGTGCTCTTTGAAAACCCTGCCACTTACAAATCAACTGTATGAATTTGTTGACATTAAATTGTGTCATAGCAAAATTGAACAACTTTGGCATAGTAAAAAGTTTCTGGAAAAGCTGAAGTACTTGGATTTGAGTTTTTCCAAAAATCTAAAGCGATCTCCTGATTTTTCTGGGGTTCCAAACCTTGAAAAATTGGTCCTTGAAGGTTGTACAAGGCTCAATGAGGTTCATCCATCCCTTTTGCACCAGAAGAAACTTGTTATAATGGATTTAAAAGACTGCAAAAGTCTCAAAGCTCTTCCAGGTAAATTGGAGTTGAGTTCTCTGACGAAGTTAATTCTTACTGGTTGCTCTAAATTTAAAAATGTTCCAGAGTTTGGGGAAAGTATGAAACATCTATCAGTGCTTTCTTTAGAGGGAACAGCAATAACAAAACTACCCTCGTCAGTTGGATGTCTAATGAGCCTTGCTGATTTGAACTTAAAGGATTGCAAAAACCTTGTTTGCCTTCCAGATACCATTGATAGATTGAAGTCTCTTAATATCCTGAACACTTGTGGATGCTCAAAGTTCAGTAGTTTGACAGAGGGTTTAAAAGAAAAGGAGTGTTCAGAGGAACTTTGCCCCATTGAATCTGCTAATAAAAGCAAAAAATTATCATTTGCTTGGGGGAAAGAGCCAGTATCTAGTTCATTGAGGACTAAGTCAACTGTCATTAGACTCAGATCACCCGGTTCTGTCTTAAGTCTACATTCTCTGAGCATTATGAATTTAAGCTACTGCAATTTGTCTGAAGAATCAATCCTGCATATTTCTTGCGACCTACCCTGTTTGAAGTTTTTGGATCTAAGTGGGAACAATTTTGTTAGTGTGCCATTTAATATTTCTAAACTTACAAAGCTGGAATATCTTGGGCTAAATTATTGCCAAAAACTTCAATGGTTGCCAGAACTTCCATCAAGTATAAAAGAATTGGATGCAAGCCAGTGTGATTCACTGCAAACCTCCAAATTCAATCCATACAGTCTCTTTGCTTCACTTGGACAATATCCTTCTGAGGTCTGGGGTGAAATTCCATCATGGTTTGACCATCAAGAAGATGGTGGATATGTATTAGTCCCTGGTAATTTCTCTTCAAATGAGTTGGTGGGAATTGCTTTGTGTTTCTTGTTGACAAGTTATGCTCAGTCTTGCCATTATGCAATCGAGTGTTCTGCTGCTGATCATGTATTCTTCAAGAAAAGGCTTTTACCTCAGATGAAGCCTGGTTGTCCTCACCTTTATATTCTCTTTTTCGTGGACCCTCTATCTTGTGTTGAAATCAGCCAAGATGTTCGCTTTGGACTGTTTGTAGAAGAACATTTTTGTACTAACAACTGCCTTTATCCAAATCTATTGGATTTGAAAACAGTGAGCTGCGGGTTCCGTTTGTTATATAAGCGAGATATGGAAGATTTGAGAAAAAGCATTGAGCAATTGCAATGA 3246 0.3842 MALISSSSRGVNPLLWTYHVFLSFRGEDTRRGFTDHLCASLERKGITTFKDDKDLEKGQAISKELLKAIEESMFAIIILSPNYASSTWCLDEIQKIVECKNNQALELMPVFYGVDPSDVRHQRGSLEEAFKNHEENFGQDSDKVKKWRHALTQASSYSGWDSKDRHEAELVESIVQHIHKKLIPKLPYCTENIVGIASRVNEVNWIMGMRLNDVRFIGVWGMGGIGKTTIARAVYEAIKVNFKVTCFVASIRERDETNGLVQVQRDLLSCLNINSCDVHDLYDGKKTIQNSLCNKKVLIVLDDVSEAKQLENLAGNQDWFGPGSRVIITTRDMHLLRINGVHKTYKVGGLVQNEALHLFCLKAFKQDQPQNGYLDLSKEVVEYTGGLPLALEVLGSYLNGRTIDVWHSALKQIRRFPLSKIQDTLNISYEGLNPMEKDLFLDITCFFKGMQKDKVINMVENCGNCARIGIEVLIERSLITVNKWGELEMHDLLQEMGRNIVFQESANNPGQQSRLWSQEDIDHVLTKSKGTKAIQSIVLNPTQQYEAHWSPKAFSETTELKFLKLSDVQLHSDLNCLPSSLKVLHWSGCSLKTLPLTNQLYEFVDIKLCHSKIEQLWHSKKFLEKLKYLDLSFSKNLKRSPDFSGVPNLEKLVLEGCTRLNEVHPSLLHQKKLVIMDLKDCKSLKALPGKLELSSLTKLILTGCSKFKNVPEFGESMKHLSVLSLEGTAITKLPSSVGCLMSLADLNLKDCKNLVCLPDTIDRLKSLNILNTCGCSKFSSLTEGLKEKECSEELCPIESANKSKKLSFAWGKEPVSSSLRTKSTVIRLRSPGSVLSLHSLSIMNLSYCNLSEESILHISCDLPCLKFLDLSGNNFVSVPFNISKLTKLEYLGLNYCQKLQWLPELPSSIKELDASQCDSLQTSKFNPYSLFASLGQYPSEVWGEIPSWFDHQEDGGYVLVPGNFSSNELVGIALCFLLTSYAQSCHYAIECSAADHVFFKKRLLPQMKPGCPHLYILFFVDPLSCVEISQDVRFGLFVEEHFCTNNCLYPNLLDLKTVSCGFRLLYKRDMEDLRKSIEQLQ. 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00949 1081 Coils Coil 1063 1081 - -
Seca2g00949 1081 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 160 IPR035897 -
Seca2g00949 1081 Gene3D - 181 344 IPR027417 -
Seca2g00949 1081 Gene3D Ribonuclease Inhibitor 711 939 IPR032675 -
Seca2g00949 1081 SUPERFAMILY "Winged helix" DNA-binding domain 419 525 IPR036390 -
Seca2g00949 1081 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Seca2g00949 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 713 IPR044974 GO:0006952
Seca2g00949 1081 Pfam TIR domain 18 188 IPR000157 GO:0007165
Seca2g00949 1081 SUPERFAMILY L domain-like 539 923 - -
Seca2g00949 1081 Gene3D - 15 180 IPR035897 -
Seca2g00949 1081 PRINTS Disease resistance protein signature 216 231 - -
Seca2g00949 1081 PRINTS Disease resistance protein signature 621 637 - -
Seca2g00949 1081 PRINTS Disease resistance protein signature 291 305 - -
Seca2g00949 1081 PRINTS Disease resistance protein signature 384 398 - -
Seca2g00949 1081 SMART till_3 17 157 IPR000157 GO:0007165
Seca2g00949 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 443 IPR027417 -
Seca2g00949 1081 Pfam NB-ARC domain 212 430 IPR002182 GO:0043531
Seca2g00949 1081 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Seca2g00949 1081 Gene3D Ribonuclease Inhibitor 504 710 IPR032675 -
Seca2g00949 1081 Gene3D - 350 433 IPR042197 -
Seca2g00949 1081 SMART LRR_typ_2 862 885 IPR003591 -
Seca2g00949 1081 SMART LRR_typ_2 717 740 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00949 Seca-Chr2 15274868 15279830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00949 18 790 WRKY Transcription Factor Family AT4G12020 31.156 4.09e-100 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00949 - - aprc:113861574 1261.9